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[184144_at]

Description C05D9.8 /REP_DB=WormBase Gene ID /WP=CE23520 /TR=Q9GYJ8 /GB=AAF98606.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_high_8_8 > 51      6grp_highest_nonorm > 70      6grp_total > 07      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1363
1 2 3 4 range
A 1168.6
(2.3)
P 		1309.1
(3)
P 		1158.5
(2.3)
P 		68.5
(-3)
A 		1241
B 1407.7
(3)
P 		1144.8
(1.8)
P 		1226.9
(2.2)
P 		45.2
(-3)
M 		1363
C 1008.7
(2.3)
P 		936.5
(1.9)
P 		1133.6
(3)
P 		77
(-3)
P 		1057
avr 1195
(3) 		1130.1
(2.7) 		1173
(2.9) 		63.6
(-3) 		1131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 660
1 2 3 4 5 6 range
A 632.5
(3)
P 		293.9
(-0.7)
P 		153.6
(-2.2)
P 		129.1
(-2.5)
P 		112
(-2.6)
P 		78.8
(-3)
P 		554
B 548
(3)
P 		337.3
(0.3)
P 		209.6
(-1.4)
P 		129.8
(-2.4)
P 		109.8
(-2.7)
P 		85.4
(-3)
P 		463
C 730.8
(3)
P 		311.8
(-0.8)
P 		271.8
(-1.2)
P 		156.5
(-2.2)
P 		125.1
(-2.5)
P 		70.7
(-3)
P 		660
avr 637.1
(3) 		314.3
(-0.5) 		211.7
(-1.6) 		138.5
(-2.4) 		115.6
(-2.6) 		78.3
(-3) 		559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 439
1 2 3 4 range
A 425.5
(3)
P 		284.2
(1)
P 		302.9
(1.2)
P 		10
(-3)
A 		416
B 448.9
(3)
P 		282.7
(0.7)
P 		284.3
(0.8)
P 		9.6
(-3)
M 		439
C 333.9
(2)
P 		269.3
(1)
P 		395.1
(3)
P 		13
(-3)
P 		382
avr 402.8
(3) 		278.7
(1.1) 		327.4
(1.8) 		10.9
(-3) 		392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 116.6
(3)
P 		104.5
(2.3)
P 		33.5
(-2.1)
P 		32.8
(-2.2)
P 		33.8
(-2.1)
P 		19.2
(-3)
P 		97
B 190.7
(3)
P 		112.3
(0)
P 		50.9
(-2.3)
P 		34.4
(-2.9)
P 		44.6
(-2.5)
P 		31.8
(-3)
P 		159
C 270.9
(3)
P 		95.1
(-1.3)
P 		69.2
(-1.9)
P 		31.5
(-2.8)
P 		40.5
(-2.6)
P 		23.7
(-3)
P 		247
avr 192.7
(3) 		104
(-0.2) 		51.2
(-2.1) 		32.9
(-2.7) 		39.6
(-2.5) 		24.9
(-3) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184144_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18528
Sequence Type Exemplar sequence
Representative Public ID C05D9.8 NCBI
Target Description C05D9.8 /REP_DB=WormBase Gene ID /WP=CE23520 /TR=Q9GYJ8 /GB=AAF98606.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075817
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000008763 ENSEMBL cdna:SNAP chromosome:CEL140:X:1133691:1135979:-1 10/11 None
GENEFINDER00000008773 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1133691:1149641:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075817 8/11 Cross Hyb Matching Probes None
R193.2 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1133672-1135824(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39956 Hypothetical protein R193.2 [Caenorhabditis elegans] ref|NP_508218.2| R193.2 [Caenorhabditis elegans] 0.0
blast T31064 hypothetical protein C05D9.8 - Caenorhabditis elegans 0.0
blast CAE60518 Hypothetical protein CBG04137 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 5.3E-22
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.1E-8
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 4.0E-16
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 5.3E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008773 2 20-42,55-77
Sequence
Target Sequence 
>C. ELEGANS:184144_AT
gtatttgctttggggctcaacaaccagagatttgactatgttagaaatttcacaaataca
ggattttacgagactgtcagaaatgtttctagtctatcgatcaattctccagcagtcaac
gatctcttgactgcactacctttgtataaaacttttgatagtgatgctacagtgccctta
acttattgctattattacaagaacaccatctacccaacaccaatttccggcaaggatgct
gttaaggcagactacatattcctggtggacagtgctcttggagaaggctatacacagaat
gtgcagaacttcttgaacagttttatcactaatgttggtaactttacatcaactggaaat
gatacgaagatggctgtggtgacatatggaagatccgtgaacactgtgtggagtttgacg
gatttacaagatgtgacgtcactgagaattcagatttcaaacttccaaatcaccacatct
tctggaataagcaacttgagaagaatctcacctaacatcgacggtccaacatcaagacat
ctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTTGCTTTGGGGCTCAACAACC 610 453 808 Antisense
CTAGTCTATCGATCAATTCTCCAGC 335 225 896 Antisense
CAATTCTCCAGCAGTCAACGATCTC 663 179 909 Antisense
TCTTGACTGCACTACCTTTGTATAA 184 617 932 Antisense
GCTACAGTGCCCTTAACTTATTGCT 503 301 973 Antisense
TTACAAGAACACCATCTACCCAACA 60 685 1002 Antisense
CCAACACCAATTTCCGGCAAGGATG 34 277 1021 Antisense
ATTCCTGGTGGACAGTGCTCTTGGA 198 9 1065 Antisense
ACTTCCAAATCACCACATCTTCTGG 205 105 1268 Antisense
GAATCTCACCTAACATCGACGGTCC 86 329 1310 Antisense
GACGGTCCAACATCAAGACATCTCA 433 377 1327 Antisense
Sequence Source Affymetrix Proprietary Database