[Home] | [Total List]

[184143_at]

Description Y50E8A.9 /REP_DB=WormBase Gene ID /WP=CE22316 /TR=Q9NAE9 /GB=CAB55057.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 31      6grp_total > 95      4grp_total > 32      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 32.4
(-2)
P 		25.4
(-3)
A 		66
(3)
P 		45.3
(-0.1)
A 		41
B 34
(-2.5)
M 		33
(-2.8)
A 		57
(3)
P 		32.1
(-3)
A 		25
C 34.6
(-2.3)
A 		35.6
(-2.1)
P 		31.2
(-3)
A 		60
(3)
P 		29
avr 33.7
(-2.3) 		31.3
(-3) 		51.4
(3) 		45.8
(1.3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 72.6
(1.4)
A 		19.6
(-2.9)
A 		38.5
(-1.3)
P 		18.2
(-3)
A 		91.9
(3)
P 		64.3
(0.8)
P 		74
B 32.4
(-0.8)
A 		20
(-2)
A 		9.5
(-3)
A 		58.9
(1.7)
A 		60.6
(1.8)
P 		73.2
(3)
P 		64
C 4.2
(-3)
A 		42
(0.5)
A 		6.4
(-2.8)
A 		67.9
(3)
M 		50.5
(1.3)
P 		68.2
(3)
P 		64
avr 36.4
(-0.8) 		27.2
(-1.9) 		18.1
(-3) 		48.3
(0.6) 		67.7
(2.9) 		68.6
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.8
(0.2)
P 		5.5
(-3)
A 		17.3
(3)
P 		6.6
(-2.4)
A 		12
B 10.8
(0.8)
M 		8.2
(-1.7)
A 		13.2
(3)
P 		6.8
(-3)
A 		6
C 11.5
(3)
A 		10.2
(-2.6)
P 		10.9
(0.4)
A 		10.1
(-3)
P 		1
avr 11.4
(0.6) 		8
(-2.8) 		13.8
(3) 		7.8
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13.4
(-0.7)
A 		7
(-2.4)
A 		8.4
(-2)
P 		4.6
(-3)
A 		27.7
(3)
P 		15.7
(-0.1)
P 		23
B 11.3
(-0.8)
A 		6.6
(-2)
A 		2.3
(-3)
A 		15.6
(0.2)
A 		24.6
(2.4)
P 		27.3
(3)
P 		25
C 1.5
(-3)
A 		12.8
(0.2)
A 		1.6
(-3)
A 		13.6
(0.4)
M 		16.3
(1.2)
P 		22.8
(3)
P 		21
avr 8.7
(-1.5) 		8.8
(-1.5) 		4.1
(-3) 		11.3
(-0.7) 		22.9
(3) 		21.9
(2.7) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184143_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13116
Sequence Type Exemplar sequence
Representative Public ID Y50E8A.9 NCBI
Target Description Y50E8A.9 /REP_DB=WormBase Gene ID /WP=CE22316 /TR=Q9NAE9 /GB=CAB55057.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074245 NCBI Caenorhabditis elegans Y50E8A.9 (Y50E8A.9) mRNA, complete cds. 11/11 None
SNAP00000008992 ENSEMBL cdna:SNAP chromosome:CEL140:V:14780999:14782303:-1 11/11 None
GENEFINDER00000009980 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14780999:14782303:-1 11/11 None
Y50E8A.9 ENSEMBL cdna:known chromosome:CEL140:V:14780999:14782303:-1 gene:Y50E8A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14780998-14782303(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50E8A.9
Entrez Gene 190110 Entrez gene
SwissProt Q9NAE9 EMBL-EBI
WormBase CE22316 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55057 Hypothetical protein Y50E8A.9 [Caenorhabditis elegans] ref|NP_506646.1| Y50E8A.9 [Caenorhabditis elegans] 1.0E-165
blast CAB04311 Hypothetical protein F46A8.10 [Caenorhabditis elegans] ref|NP_492890.2| F46A8.10 [Caenorhabditis elegans] 5.0E-85
blast AAA98029 Hypothetical protein K08D10.7 [Caenorhabditis elegans] ref|NP_500501.1| K08D10.7 [Caenorhabditis elegans] 3.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184143_AT
gttcatgatatgtactgtcgtccgattatgaattgtatggaaagatccaatggatttgct
cgtcaaatgcaaggatctcatcgaagctttgcaatgatgtgtacagatttatttggtgca
catgttatgcaatgtcacagagatcagccttggggatcattcacggatcacttgactaca
cagtttctgggacagaatattggaattatgtcgagaactcatggggatgtcaatttccat
cttctcggcgcgggaagcaatcaatctcttctgatccgttctccgttgtttgctgcaagt
ggtggaaccagaagcttcccagttatgacctacaatggaatgagagttggtgaaattgtt
cgcctttatcctggatatatgcaagaaatgtactctgatgcagatacttatattgtgcat
ttcccaatggatcttccaccaatcttgaagcttttgctcatctcgtctgtattccttatc
gatttcacattctttgaaaataatggacaacaaaataacatgtatcgtggatatggagga
tcacattatgttagacaacgttcttaccatagtggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCATGATATGTACTGTCGTCCGA 671 443 286 Antisense
ATCAGCCTTGGGGATCATTCACGGA 372 27 428 Antisense
GATCACTTGACTACACAGTTTCTGG 627 421 451 Antisense
GGATGTCAATTTCCATCTTCTCGGC 625 513 510 Antisense
CTCGGCGCGGGAAGCAATCAATCTC 652 231 529 Antisense
ACCAGAAGCTTCCCAGTTATGACCT 615 85 592 Antisense
AATTGTTCGCCTTTATCCTGGATAT 348 179 639 Antisense
TCTTGAAGCTTTTGCTCATCTCGTC 253 619 728 Antisense
TCATCTCGTCTGTATTCCTTATCGA 430 621 743 Antisense
ATTCCTTATCGATTTCACATTCTTT 142 9 756 Antisense
AGACAACGTTCTTACCATAGTGGAT 166 69 838 Antisense
Sequence Source Affymetrix Proprietary Database