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[184142_s_at]

Description R04A9.2 /REP_DB=WormBase Gene ID /WP=CE04789 /TR=Q21691 /GB=AAA83284.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 50      6grp_total > 07      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 375
1 2 3 4 range
A 538.2
(3)
P 		298.2
(-1.3)
P 		275
(-1.8)
P 		206.2
(-3)
P 		332
B 506.5
(3)
P 		505.9
(3)
P 		268.1
(-1.4)
P 		178.1
(-3)
P 		328
C 552.7
(3)
P 		391.8
(0.2)
P 		341.6
(-0.7)
P 		207.6
(-3)
P 		345
avr 532.5
(3) 		398.6
(0.6) 		294.9
(-1.3) 		197.3
(-3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 602.2
(3)
P 		559.5
(2.1)
P 		391.9
(-1.5)
P 		436.5
(-0.5)
P 		318.7
(-3)
P 		428.4
(-0.7)
P 		284
B 501
(3)
P 		435.4
(0.9)
P 		309.5
(-3)
P 		446.2
(1.3)
P 		369.9
(-1.1)
P 		406.6
(0)
P 		192
C 664.4
(3)
P 		448.2
(-0.8)
P 		527.4
(0.6)
P 		415.3
(-1.4)
P 		324.3
(-3)
P 		441.1
(-0.9)
P 		340
avr 589.2
(3) 		481
(0.4) 		409.6
(-1.3) 		432.7
(-0.7) 		337.6
(-3) 		425.4
(-0.9) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 196
(3)
P 		64.7
(-1.8)
P 		71.9
(-1.5)
P 		30.2
(-3)
P 		166
B 161.5
(3)
P 		125
(1.2)
P 		62.1
(-1.8)
P 		38
(-3)
P 		124
C 182.9
(3)
P 		112.7
(0.2)
P 		119.1
(0.4)
P 		35
(-3)
P 		148
avr 180.1
(3) 		100.8
(-0.3) 		84.4
(-0.9) 		34.4
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 111
(-1.6)
P 		199
(3)
P 		85.3
(-3)
P 		110.7
(-1.7)
P 		96.2
(-2.4)
P 		104.3
(-2)
P 		114
B 174.3
(3)
P 		144.9
(1.2)
P 		75.2
(-3)
P 		118.2
(-0.4)
P 		150.3
(1.5)
P 		151.6
(1.6)
P 		99
C 246.3
(3)
P 		136.7
(-1)
P 		134.2
(-1.1)
P 		83.5
(-3)
P 		104.9
(-2.2)
P 		147.7
(-0.6)
P 		163
avr 177.2
(3) 		160.2
(1.7) 		98.2
(-3) 		104.1
(-2.6) 		117.1
(-1.6) 		134.5
(-0.2) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184142_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18594
Sequence Type Exemplar sequence
Representative Public ID R04A9.2 NCBI
Target Description R04A9.2 /REP_DB=WormBase Gene ID /WP=CE04789 /TR=Q21691 /GB=AAA83284.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075691 NCBI Caenorhabditis elegans R04A9.2 (R04A9.2) mRNA, complete cds. 11/11 None
SNAP00000016335 ENSEMBL cdna:SNAP chromosome:CEL140:X:372255:376652:1 11/11 None
GENEFINDER00000016353 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:372255:376652:1 11/11 None
R04A9.2 ENSEMBL cdna:known chromosome:CEL140:X:372236:376898:1 gene:R04A9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:372254-376652(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R04A9.2
Entrez Gene 180392 Entrez gene
SwissProt Q21691 EMBL-EBI
WormBase CE04789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508092 R04A9.2 [Caenorhabditis elegans] gb|AAA83284.1| Hypothetical protein R04A9.2 [Caenorhabditis elegans] 0.0
blast CAE57596 Hypothetical protein CBG00577 [Caenorhabditis briggsae] 0.0
blast CAE58274 Hypothetical protein CBG01380 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 4.4E-51
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184142_S_AT
gttacaatcccaagtttctcgttatttgcacacaacgcaactctcacatccgagtattcc
ctgaacacattaatgaacgtggaaagtccatggagcaaaatgtaaaatccggcacttgcg
tcgatgtgccaggagcctctcacggatacgaggagttcattctttgttgccaaacacctc
tgattggaacagtaaaaccaacaaagtatactatcattgtcaacgattgtcgttggagca
agaatgagatcatgaatgtcacctaccacttggcgtttgcccaccaggtctcttatgcac
caccagctatccccaacgtgagctatgctgctcaaaatcttgctaaacgtggtcacaaca
actacaaaacacacacaaagcttgtggacatgaacgactactcttatcgaatcaaggaaa
aacatgaggaaatcatttcgtcagaggaagttgacgatattctgatgcgcgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACAATCCCAAGTTTCTCGTTAT 13 445 2648 Antisense
TTTGCACACAACGCAACTCTCACAT 517 667 2672 Antisense
ACATCCGAGTATTCCCTGAACACAT 111 107 2693 Antisense
ATCCGGCACTTGCGTCGATGTGCCA 492 37 2754 Antisense
CCAGGAGCCTCTCACGGATACGAGG 391 271 2776 Antisense
GAGGAGTTCATTCTTTGTTGCCAAA 648 403 2797 Antisense
GTTGCCAAACACCTCTGATTGGAAC 43 441 2813 Antisense
TCATGAATGTCACCTACCACTTGGC 553 621 2897 Antisense
AGCTATCCCCAACGTGAGCTATGCT 700 77 2952 Antisense
GTGGACATGAACGACTACTCTTATC 663 489 3031 Antisense
GTTGACGATATTCTGATGCGCGATT 176 439 3097 Antisense
Sequence Source Affymetrix Proprietary Database