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[184141_at]

Description T09E11.5 /REP_DB=WormBase Gene ID /WP=CE13505 /TR=Q9XVG0 /GB=CAB03529.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 4.4
(-0.4)
A 		4.3
(-0.6)
A 		3.3
(-3)
A 		5.8
(3)
A 		3
B 4.3
(-3)
A 		6.2
(-2.5)
A 		19.6
(1.1)
A 		26.7
(3)
A 		22
C 12.1
(-2.4)
A 		7.8
(-3)
A 		8.1
(-3)
A 		52
(3)
A 		44
avr 6.9
(-2.8) 		6.1
(-3) 		10.3
(-1.9) 		28.2
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.4
(-2.3)
A 		5.1
(-2.1)
A 		19.5
(3)
A 		2.4
(-3)
A 		4.5
(-2.3)
A 		3.3
(-2.7)
A 		17
B 2.9
(-2.8)
A 		2.6
(-3)
A 		5.5
(-0.7)
A 		4
(-1.9)
A 		10.3
(3)
A 		6.1
(-0.3)
A 		8
C 21.4
(3)
A 		7.2
(-1.7)
A 		3.4
(-3)
A 		3.6
(-2.9)
A 		4.7
(-2.6)
A 		3.8
(-2.9)
A 		18
avr 9.6
(3) 		5
(-1.4) 		9.5
(2.9) 		3.3
(-3) 		6.5
(0) 		4.4
(-2) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.6
(3)
A 		0.9
(-2.3)
A 		0.9
(-2.3)
A 		0.8
(-3)
A 		1
B 1.4
(-3)
A 		1.5
(-2.9)
A 		4.6
(1.5)
A 		5.7
(3)
A 		4
C 4
(-1.4)
A 		2.2
(-3)
A 		2.8
(-2.5)
A 		8.8
(3)
A 		7
avr 2.3
(-1.7) 		1.5
(-3) 		2.8
(-0.8) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.8
(-2.7)
A 		1.8
(-1.1)
A 		4.3
(3)
A 		0.6
(-3)
A 		1.3
(-1.9)
A 		0.8
(-2.7)
A 		4
B 1
(-2.8)
A 		0.9
(-3)
A 		1.3
(-2.3)
A 		1.1
(-2.6)
A 		4.2
(3)
A 		2.3
(-0.5)
A 		3
C 7.9
(3)
A 		2.2
(-1.8)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		1.5
(-2.3)
A 		1.3
(-2.5)
A 		7
avr 3.2
(3) 		1.6
(-1) 		2.2
(0.5) 		0.8
(-3) 		2.3
(0.7) 		1.5
(-1.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2237
Sequence Type Exemplar sequence
Representative Public ID T09E11.5 NCBI
Target Description T09E11.5 /REP_DB=WormBase Gene ID /WP=CE13505 /TR=Q9XVG0 /GB=CAB03529.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060727(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060727 NCBI Caenorhabditis elegans T09E11.5 (T09E11.5) mRNA, complete cds. 11/11 None
SNAP00000042467 ENSEMBL cdna:SNAP chromosome:CEL140:I:12365064:12367463:1 11/11 None
T09E11.5 ENSEMBL cdna:known chromosome:CEL140:I:12365064:12367463:1 gene:T09E11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042475 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12364994-12367394(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09E11.5
Entrez Gene 188333 Entrez gene
SwissProt Q9XVG0 EMBL-EBI
WormBase CE13505 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03529 Hypothetical protein T09E11.5 [Caenorhabditis elegans] ref|NP_493128.1| T09E11.5 [Caenorhabditis elegans] 0.0
blast CAB03534 Hypothetical protein T09E11.7 [Caenorhabditis elegans] ref|NP_493127.1| T09E11.7 [Caenorhabditis elegans] 0.0
blast CAB03533 Hypothetical protein T09E11.4 [Caenorhabditis elegans] ref|NP_493129.2| T09E11.4 [Caenorhabditis elegans] 0.0
blast NP_502342 C42C1.7 [Caenorhabditis elegans] gb|AAB97548.2| Hypothetical protein C42C1.7 [Caenorhabditis elegans] 0.0
blast NP_504196 D2063.2 [Caenorhabditis elegans] gb|AAD14691.1| Hypothetical protein D2063.2 [Caenorhabditis elegans] 1.0E-145
blast CAB03534 Hypothetical protein T09E11.7 [Caenorhabditis elegans] ref|NP_493127.1| T09E11.7 [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.3E-99
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.1E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493128.1 5 12-29,49-71,78-100,138-160,233-255
T09E11.5 5 12-29,49-71,78-100,138-160,233-255
SNAP00000042467 9 12-29,49-71,78-100,137-159,171-193,238-260,281-300,310-332,339-360
Sequence
Target Sequence 
>C. ELEGANS:184141_AT
gagggtggtcacggtaagcgcatgtgagccactggcggcttatgagcctaaacccgaatg
caaacaagaattgaaagaatttgtcgacttccttgaagcctcacaaccggactatgcatt
tattttgacacgattttttgctacaggagttgtagcaaactctacaagctccacagacct
gatctatctggaaatgagggagcagatgagcaaacttcttccaaatattaaaaagaaatt
gtatattctggatgcgttcccgagagttgatcagccatatactttgcatgtggcgaagga
tttgaagaatggaagaaatgtggatgagattcataagcaacttctcgatgctgacaacta
taaactggctcgtcaacggactgaagcaatcgttaaggaatgtggtgccaagtgtgagct
catagactatgagccattgctcttcaacaaaacctccaatcgttttgagtttttcgattc
tcgggggttcctctactttaccgtaatcaatcatctttctgcgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGGTGGTCACGGTAAGCGCATGT 657 401 1170 Antisense
TAAGCGCATGTGAGCCACTGGCGGC 709 635 1184 Antisense
GCTTATGAGCCTAAACCCGAATGCA 226 301 1207 Antisense
TTGTCGACTTCCTTGAAGCCTCACA 5 707 1250 Antisense
CAAGCTCCACAGACCTGATCTATCT 535 185 1334 Antisense
GTATATTCTGGATGCGTTCCCGAGA 654 451 1410 Antisense
GTTCCCGAGAGTTGATCAGCCATAT 693 441 1425 Antisense
CAACTTCTCGATGCTGACAACTATA 119 189 1507 Antisense
GTGGTGCCAAGTGTGAGCTCATAGA 442 489 1571 Antisense
GTTCCTCTACTTTACCGTAATCAAT 550 439 1656 Antisense
CGTAATCAATCATCTTTCTGCGCAC 244 247 1671 Antisense
Sequence Source Affymetrix Proprietary Database