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[184140_at]

Description F49E8.2 /REP_DB=WormBase Gene ID /WP=CE28407 /TR=Q20629 /GB=AAB03150.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 96      4grp_high_8_8 > 30      6grp_total > 86      4grp_total > 33      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 32.4
(-3)
P 		93.5
(2.8)
P 		89.7
(2.5)
P 		95.4
(3)
P 		63
B 44.8
(-3)
M 		81
(-0.6)
P 		84.4
(-0.4)
P 		135.2
(3)
P 		90
C 62.1
(-3)
P 		90.4
(0.8)
P 		107.1
(3)
P 		99.6
(2)
P 		45
avr 46.4
(-3) 		88.3
(0.9) 		93.7
(1.5) 		110.1
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 36.4
(-3)
A 		38
(-3)
P 		94
(-1.9)
P 		190.4
(-0)
P 		284.5
(1.8)
P 		345.4
(3)
P 		309
B 30.6
(-3)
P 		39.4
(-2.9)
A 		72.7
(-2.4)
P 		156.5
(-1.2)
P 		249
(0.1)
P 		447.1
(3)
P 		417
C 28.5
(-3)
A 		42.1
(-2.8)
M 		83.9
(-2.1)
P 		177.4
(-0.6)
P 		203.8
(-0.1)
P 		396.5
(3)
P 		368
avr 31.8
(-3) 		39.8
(-2.9) 		83.5
(-2.1) 		174.8
(-0.6) 		245.8
(0.5) 		396.3
(3) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 11.8
(-3)
P 		20.3
(1.4)
P 		23.4
(3)
P 		14
(-1.9)
P 		12
B 14.3
(-3)
M 		20
(-0.6)
P 		19.6
(-0.8)
P 		28.8
(3)
P 		15
C 20.6
(-1.9)
P 		26
(-0.3)
P 		37.3
(3)
P 		16.8
(-3)
P 		21
avr 15.6
(-3) 		22.1
(0.5) 		26.8
(3) 		19.9
(-0.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 6.7
(-3)
A 		13.5
(-2.5)
P 		20.5
(-2)
P 		48.3
(0.2)
P 		85.8
(3)
P 		84.1
(2.9)
P 		79
B 10.6
(-3)
P 		13.1
(-2.9)
A 		17.7
(-2.7)
P 		41.4
(-1.8)
P 		101.2
(0.5)
P 		166.7
(3)
P 		156
C 10.6
(-3)
A 		12.8
(-2.9)
M 		21.4
(-2.5)
P 		35.7
(-1.8)
P 		65.9
(-0.3)
P 		132.7
(3)
P 		122
avr 9.3
(-3) 		13.1
(-2.8) 		19.9
(-2.5) 		41.8
(-1.4) 		84.3
(0.8) 		127.8
(3) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184140_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8923
Sequence Type Exemplar sequence
Representative Public ID F49E8.2 NCBI
Target Description F49E8.2 /REP_DB=WormBase Gene ID /WP=CE28407 /TR=Q20629 /GB=AAB03150.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068821 NCBI Caenorhabditis elegans F49E8.2 (F49E8.2) mRNA, complete cds. 11/11 None
SNAP00000021360 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7548542:7551034:1 11/11 None
GENEFINDER00000021367 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7548542:7551402:1 11/11 None
F49E8.2 ENSEMBL cdna:known chromosome:CEL140:IV:7548422:7551429:1 gene:F49E8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7548427-7551040(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49E8.2
Entrez Gene 177529 Entrez gene
SwissProt Q20629 EMBL-EBI
WormBase CE28407 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03150 Hypothetical protein F49E8.2 [Caenorhabditis elegans] ref|NP_501222.1| F49E8.2 [Caenorhabditis elegans] 0.0
blast CAE61911 Hypothetical protein CBG05907 [Caenorhabditis briggsae] 6.0E-76
blast CAE61911 Hypothetical protein CBG05907 [Caenorhabditis briggsae] 8.0E-76
blast CAE61911 Hypothetical protein CBG05907 [Caenorhabditis briggsae] 9.0E-76
Sequence
Target Sequence 
>C. ELEGANS:184140_AT
ggcatattgttcgctgtgcaagcatgaagtggaaaccggtagaaaccgaaatacaaaaat
taggaaacagactgaacatgttctagacgcccacccagaatcggaatttctcaatgtaga
catagcaaaacgctatgagtgtgtccactgtttgagaactcttcctgtgtcgaaatcacc
atgtgaacatatttctgaacaccacgataaaacccacgtggaaattgaatttcgtgactt
atggtccaatgagcaagtgtcaactttcaattcagttatggaaaaatgcttcttgcgtca
tcttccagttcccagaagccgtagaattcgaaacggaaacacctggtatctctccgaaaa
ggcctcgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATATTGTTCGCTGTGCAAGCAT 527 535 621 Antisense
GACTGAACATGTTCTAGACGCCCAC 542 375 690 Antisense
CGCCCACCCAGAATCGGAATTTCTC 79 257 708 Antisense
GCAAAACGCTATGAGTGTGTCCACT 296 319 745 Antisense
GTGTCCACTGTTTGAGAACTCTTCC 689 487 761 Antisense
GAACTCTTCCTGTGTCGAAATCACC 670 349 776 Antisense
TTCTGAACACCACGATAAAACCCAC 202 695 813 Antisense
AAAAATGCTTCTTGCGTCATCTTCC 604 129 902 Antisense
TCTTCCAGTTCCCAGAAGCCGTAGA 86 619 921 Antisense
GAAACGGAAACACCTGGTATCTCTC 665 357 950 Antisense
GTATCTCTCCGAAAAGGCCTCGTAC 145 453 966 Antisense
Sequence Source Affymetrix Proprietary Database