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[184139_at]

Description Y48E1B.1 /REP_DB=WormBase Gene ID /WP=CE14854 /TR=O18195 /GB=CAB07688.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 02      6grp_cgc > 15      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 3.3
(-3)
A 		3.8
(-2.9)
A 		3.4
(-3)
A 		24.4
(3)
A 		21
B 1.5
(-3)
A 		3.3
(-1.6)
A 		4.7
(-0.5)
A 		9.3
(3)
A 		8
C 3.1
(-2.8)
A 		3.5
(-2.7)
A 		1.4
(-3)
A 		50.3
(3)
A 		49
avr 2.6
(-3) 		3.5
(-2.8) 		3.2
(-2.9) 		28
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.6
(0.5)
A 		10.8
(3)
A 		3
(-3)
A 		3.6
(-2.5)
A 		3.7
(-2.5)
A 		10.4
(2.7)
A 		8
B 11.6
(3)
A 		2.3
(-2.7)
A 		1.8
(-3)
A 		2.5
(-2.6)
A 		3.3
(-2.1)
A 		2.7
(-2.4)
A 		10
C 4.9
(-0.8)
A 		2.6
(-2.8)
A 		2.3
(-3)
A 		9.5
(3)
A 		3.6
(-1.9)
A 		2.5
(-2.8)
A 		7
avr 8
(3) 		5.2
(0) 		2.4
(-3) 		5.2
(0) 		3.5
(-1.8) 		5.2
(0) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.2
(-2.1)
A 		0.8
(-3)
A 		0.9
(-2.8)
A 		3.6
(3)
A 		3
B 0.5
(-3)
A 		0.8
(-1.8)
A 		1.1
(-0.6)
A 		2
(3)
A 		2
C 1
(-2.6)
A 		1
(-2.6)
A 		0.5
(-3)
A 		8.5
(3)
A 		8
avr 0.9
(-2.8) 		0.9
(-2.8) 		0.8
(-3) 		4.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.4
(-1.6)
A 		3.8
(3)
A 		0.7
(-3)
A 		0.9
(-2.6)
A 		1.1
(-2.2)
A 		2.5
(0.5)
A 		3
B 4
(3)
A 		0.8
(-2.3)
A 		0.4
(-3)
A 		0.7
(-2.5)
A 		1.3
(-1.5)
A 		1
(-2)
A 		4
C 1.8
(2.5)
A 		0.8
(-2.1)
A 		0.6
(-3)
A 		1.9
(3)
A 		1.2
(-0.2)
A 		0.8
(-2.1)
A 		1
avr 2.4
(3) 		1.8
(1) 		0.6
(-3) 		1.2
(-1) 		1.2
(-1) 		1.4
(-0.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184139_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2806
Sequence Type Exemplar sequence
Representative Public ID Y48E1B.1 NCBI
Target Description Y48E1B.1 /REP_DB=WormBase Gene ID /WP=CE14854 /TR=O18195 /GB=CAB07688.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064446 NCBI Caenorhabditis elegans Y48E1B.1 (Y48E1B.1) mRNA, complete cds. 11/11 None
SNAP00000010059 ENSEMBL cdna:SNAP chromosome:CEL140:II:13533528:13585325:-1 11/11 None
GENEFINDER00000010068 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13542731:13547525:-1 11/11 None
Y48E1B.1 ENSEMBL cdna:known chromosome:CEL140:II:13542731:13547525:-1 gene:Y48E1B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13542727-13547522(-) 96.52 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ddl-2
Ensembl Y48E1B.1
Entrez Gene 190025 Entrez gene
SwissProt O18195 EMBL-EBI
WormBase CE14854 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.24111.1.S1_AT similar to CXYorf1-related protein cfa
CANINE_2:CFAAFFX.24113.1.S1_AT similar to CXYorf1-related protein cfa
CANINE_2:CFAAFFX.24113.1.S1_S_AT similar to CXYorf1-related protein cfa
DROSOPHILA_2:1637899_AT dm
DROSGENOME1:147061_AT dm
CHICKEN:GGAAFFX.12281.1.S1_S_AT similar to CXYorf1-related protein gga
CHICKEN:GGAAFFX.8211.1.S1_AT similar to CXYorf1-related protein gga
CHICKEN:GGAAFFX.8211.1.S1_S_AT similar to CXYorf1-related protein gga
HU35KSUBA:AA278412_AT CXYorf1-related protein hs
U133_X3P:HS.271468.0.S1_3P_X_AT CXYorf1-related protein hs
U133_X3P:HS.271468.0.S1_3P_AT CXYorf1-related protein hs
U133_X3P:HS.21346.3.S1_3P_X_AT CXYorf1-related protein hs
U133_X3P:HS.21346.2.S1_3P_X_AT CXYorf1-related protein hs
U133_X3P:HS.21346.1.S1_3P_X_AT CXYorf1-related protein hs
U133_X3P:HS.21346.0.A1_3P_A_AT CXYorf1-related protein hs
U133_X3P:226340_3P_X_AT CXYorf1-related protein hs
HG-U133_PLUS_2:1557034_S_AT CXYorf1-related protein hs
HG-U133_PLUS_2:225035_X_AT CXYorf1-related protein hs
HG-U133B:225035_X_AT CXYorf1-related protein hs
HG-U133_PLUS_2:225995_X_AT CXYorf1-related protein hs
HG-U133B:225995_X_AT CXYorf1-related protein hs
HG-U133_PLUS_2:226340_X_AT CXYorf1-related protein hs
HG-U133B:226340_X_AT CXYorf1-related protein hs
HG-U133_PLUS_2:231811_AT CXYorf1-related protein hs
HG-U133B:231811_AT CXYorf1-related protein hs
HG-U95C:65766_AT CXYorf1-related protein hs
HG-U95D:89363_AT CXYorf1-related protein hs
U133_X3P:HS.21346.0.A1_3P_X_AT CXYorf1-related protein hs
MOUSE430A_2:1424597_AT open reading frame 19 mm
MOE430A:1424597_AT open reading frame 19 mm
MOUSE430_2:1424597_AT open reading frame 19 mm
MG-U74BV2:116940_AT open reading frame 19 mm
MG-U74BV2:165045_R_AT open reading frame 19 mm
MOE430A:1451404_AT open reading frame 19 mm
MOUSE430A_2:1451404_AT open reading frame 19 mm
MOUSE430_2:1451404_AT open reading frame 19 mm
MU19KSUBB:TC31299_AT Open reading frame 19, mRNA (cDNA clone MGC:37972 IMAGE:5136195) mm
MU19KSUBB:TC31857_AT Open reading frame 19, mRNA (cDNA clone MGC:37972 IMAGE:5136195) mm
RG-U34B:RC_AA925193_AT open reading frame 19 (predicted) rn
RAE230A:1373737_AT open reading frame 19 (predicted) rn
RAT230_2:1373737_AT open reading frame 19 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB07688 Hypothetical protein Y48E1B.1 [Caenorhabditis elegans] ref|NP_496847.1| Y48E1B.1 [Caenorhabditis elegans] 0.0
blast CAB07689 Hypothetical protein Y48E1B.2a [Caenorhabditis elegans] ref|NP_496845.1| Y48E1B.2a [Caenorhabditis elegans] 0.0
blast CAE73333 Hypothetical protein CBG20762 [Caenorhabditis briggsae] 0.0
blast CAB07690 Hypothetical protein Y48E1B.4 [Caenorhabditis elegans] ref|NP_496849.1| Y48E1B.4 [Caenorhabditis elegans] 0.0
blast CAE73332 Hypothetical protein CBG20761 [Caenorhabditis briggsae] 4.0E-96
blast CAE73332 Hypothetical protein CBG20761 [Caenorhabditis briggsae] 2.0E-67
blast XP_785243 PREDICTED: similar to CXYorf1-related protein, partial [Strongylocentrotus purpuratus] 3.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 0.015
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 0.011
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 5.2E-9
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 7.8E-4
Pfam IPR001330 EMBL-EBI Prenyltransferase/squalene oxidase 0.049
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000010059 2 1554-1576,1588-1610
Sequence
Target Sequence 
>C. ELEGANS:184139_AT
gaggatcggcttctagacatccttccagcagatgatcagattcctgaagcatcggagccc
actgaagctgaagctgatgctccgacgacgttcattcttccaccaccaccaccaccgatg
aagcttgatccttctcctcagccagctgcaactccagtagagatcacagagattcctccg
atcatctcacctccagcaccaccaccgccacctccaccaccgccacctccacctccaccg
cagaccccatcagcaagctcctccgtaaccttcagccccacgaaatccgtcgacggaggc
cgttcagacttgatggctgcgatccgagcagccggtggagctggaaatgcgaaactcagc
aggattgccgaaaagccgaagcggaaggggaaattcgatgggattcttgagtcgtcggct
cttctcggagcatcggaaacgccgagaaattcagcaccagctccagacggcggtggtggt
ggtggagacttgatgtcggcattgtcgaaggcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATCGGCTTCTAGACATCCTTC 686 403 883 Antisense
TGAAGCATCGGAGCCCACTGAAGCT 479 573 927 Antisense
GCCAGCTGCAACTCCAGTAGAGATC 565 279 1023 Antisense
ATCACAGAGATTCCTCCGATCATCT 495 27 1045 Antisense
GAAATCCGTCGACGGAGGCCGTTCA 288 357 1164 Antisense
GCCGTTCAGACTTGATGGCTGCGAT 643 283 1181 Antisense
GCTGCGATCCGAGCAGCCGGTGGAG 654 295 1198 Antisense
ATGGGATTCTTGAGTCGTCGGCTCT 231 51 1280 Antisense
CTCTTCTCGGAGCATCGGAAACGCC 49 229 1301 Antisense
AACGCCGAGAAATTCAGCACCAGCT 69 147 1320 Antisense
GATGTCGGCATTGTCGAAGGCACTG 695 407 1374 Antisense
Sequence Source Affymetrix Proprietary Database