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[184138_at]

Description K02E7.1 /REP_DB=WormBase Gene ID /WP=CE11622 /TR=O17260 /GB=AAB71022.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 5
(-3)
A 		249.5
(1)
P 		369.6
(3)
P 		44.2
(-2.4)
A 		365
B 5.2
(-3)
A 		333.3
(3)
P 		264.4
(1.7)
P 		5.6
(-3)
A 		328
C 7.2
(-3)
A 		277.1
(3)
P 		266.9
(2.8)
P 		27.5
(-2.5)
A 		270
avr 5.8
(-3) 		286.6
(2.7) 		300.3
(3) 		25.8
(-2.6) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 48.2
(-1.4)
A 		164.9
(3)
P 		84.7
(-0)
P 		33.1
(-2)
A 		27.9
(-2.2)
A 		6.3
(-3)
A 		159
B 35.1
(-2.8)
A 		227.4
(3)
P 		100.3
(-0.8)
P 		37.1
(-2.7)
A 		53.6
(-2.2)
A 		27.7
(-3)
A 		200
C 14.2
(-2.7)
A 		157.2
(3)
P 		59.7
(-0.9)
A 		78.9
(-0.1)
A 		6.9
(-3)
A 		44.6
(-1.5)
P 		150
avr 32.5
(-2.8) 		183.2
(3) 		81.6
(-0.9) 		49.7
(-2.1) 		29.5
(-2.9) 		26.2
(-3) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 1.8
(-3)
A 		54.2
(0.3)
P 		96.6
(3)
P 		6.5
(-2.7)
A 		95
B 1.6
(-3)
A 		82.3
(3)
P 		61.3
(1.4)
P 		1.2
(-3)
A 		81
C 2.4
(-3)
A 		79.7
(2.1)
P 		93
(3)
P 		4.6
(-2.9)
A 		91
avr 1.9
(-3) 		72.1
(2.2) 		83.6
(3) 		4.1
(-2.8) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 8.9
(-2.2)
A 		58.6
(3)
P 		18.4
(-1.2)
P 		8.4
(-2.3)
A 		8.4
(-2.3)
A 		1.5
(-3)
A 		57
B 12.2
(-2.8)
A 		75.7
(3)
P 		24.4
(-1.7)
P 		9.8
(-3)
A 		21.8
(-1.9)
A 		10.3
(-3)
A 		66
C 5.3
(-2.6)
A 		48
(3)
P 		15.2
(-1.3)
A 		15.9
(-1.2)
A 		2.2
(-3)
A 		14.9
(-1.3)
P 		46
avr 8.8
(-3) 		60.8
(3) 		19.3
(-1.8) 		11.4
(-2.7) 		10.8
(-2.8) 		8.9
(-3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184138_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5540
Sequence Type Exemplar sequence
Representative Public ID K02E7.1 NCBI
Target Description K02E7.1 /REP_DB=WormBase Gene ID /WP=CE11622 /TR=O17260 /GB=AAB71022.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061508(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061508 NCBI Caenorhabditis elegans K02E7.1 (K02E7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000023039 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1083177:1083926:1 10/11 None
K02E7.1 ENSEMBL cdna:known chromosome:CEL140:II:1083130:1083926:1 gene:K02E7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023031 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1083127-1083925(+) 100.0 100.0
Public Domain and Genome References
Ensembl K02E7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71022 Hypothetical protein K02E7.1a [Caenorhabditis elegans] ref|NP_493909.2| K02E7.1 [Caenorhabditis elegans] 2.0E-71
blast ABA03117 Hypothetical protein K02E7.1b [Caenorhabditis elegans] 4.0E-67
blast ABA03117 Hypothetical protein K02E7.1b [Caenorhabditis elegans] 7.0E-57
blast AAB71022 Hypothetical protein K02E7.1a [Caenorhabditis elegans] ref|NP_493909.2| K02E7.1 [Caenorhabditis elegans] 4.0E-56
blast CAA88543 Hypothetical protein R07B1.6 [Caenorhabditis elegans] ref|NP_509654.1| R07B1.6 [Caenorhabditis elegans] sp|Q09420|YRN6_CAEEL Hypothetical protein R07B1.6 in chromosome X 2.0E-27
blast CAA88543 Hypothetical protein R07B1.6 [Caenorhabditis elegans] ref|NP_509654.1| R07B1.6 [Caenorhabditis elegans] sp|Q09420|YRN6_CAEEL Hypothetical protein R07B1.6 in chromosome X 4.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 3.1E-16
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 3.1E-16
Sequence
Target Sequence 
>C. ELEGANS:184138_AT
agaattttttcacaatgcgccacttaatactctccttaacaatattctcaacctgtatag
caattccaccaacttccgttattggaactgtaaatggttgccgaacaattacgtatacat
gccaaagaacacctcctgttgctactgatgtggttcagattacttactacagcgatagcc
gtacagatccagcatccatcgaaaatggcgtgggcgtggtgcaggcgttgagcacagcaa
gtgccgtaatcgattgtgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAATTTTTTCACAATGCGCCACTT 595 71 47 Antisense
GCCACTTAATACTCTCCTTAACAAT 494 279 65 Antisense
CTGTATAGCAATTCCACCAACTTCC 581 239 99 Antisense
TACATGCCAAAGAACACCTCCTGTT 582 641 162 Antisense
CACCTCCTGTTGCTACTGATGTGGT 622 201 176 Antisense
GTGGTTCAGATTACTTACTACAGCG 167 489 196 Antisense
ACTACAGCGATAGCCGTACAGATCC 8 101 212 Antisense
GTACAGATCCAGCATCCATCGAAAA 379 459 227 Antisense
GAAAATGGCGTGGGCGTGGTGCAGG 411 353 247 Antisense
TGCAGGCGTTGAGCACAGCAAGTGC 706 575 266 Antisense
GCAAGTGCCGTAATCGATTGTGTGG 497 321 283 Antisense
Sequence Source Affymetrix Proprietary Database