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[184137_at]

Description Y73F8A.5 /REP_DB=WormBase Gene ID /WP=CE25599 /TR=Q9NA40 /GB=CAB70224.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 16      6grp_total > 16      4grp_total > 30      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 235.9
(2.4)
P 		160.5
(-0.2)
M 		81.3
(-3)
A 		251.6
(3)
P 		170
B 275.4
(3)
P 		139.9
(-2.8)
P 		134.7
(-3)
A 		194.4
(-0.5)
P 		141
C 239.7
(3)
P 		186.1
(0.5)
M 		108.8
(-3)
A 		232.4
(2.7)
P 		131
avr 250.3
(3) 		162.2
(-0.7) 		108.3
(-3) 		226.1
(2) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 270.1
(3)
P 		191.9
(0.4)
P 		92.3
(-2.9)
A 		152.5
(-0.9)
P 		118.7
(-2)
M 		88
(-3)
P 		182
B 225.8
(3)
P 		197
(1.6)
P 		108.8
(-2.6)
P 		114.3
(-2.3)
P 		108.2
(-2.6)
P 		100
(-3)
P 		126
C 240.8
(3)
P 		175.7
(0.6)
P 		132
(-1)
P 		76.9
(-3)
P 		109.5
(-1.8)
P 		125.2
(-1.2)
P 		164
avr 245.6
(3) 		188.2
(0.6) 		111
(-2.7) 		114.6
(-2.6) 		112.1
(-2.7) 		104.4
(-3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 85.9
(3)
P 		34.8
(-1.7)
M 		21.3
(-3)
A 		36.8
(-1.6)
P 		65
B 87.8
(3)
P 		34.6
(-2.6)
P 		31.2
(-3)
A 		41.4
(-1.9)
P 		57
C 79.4
(3)
P 		53.5
(-0.7)
M 		37.9
(-3)
A 		39.2
(-2.8)
P 		42
avr 84.4
(3) 		41
(-1.8) 		30.1
(-3) 		39.1
(-2) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 49.8
(0.7)
P 		68.2
(3)
P 		20.1
(-3)
A 		38.7
(-0.7)
P 		35.8
(-1)
M 		21.4
(-2.8)
P 		48
B 78.6
(3)
P 		65.6
(1.5)
P 		26.4
(-3)
P 		30.3
(-2.6)
P 		44
(-1)
P 		37.3
(-1.7)
P 		52
C 89.3
(3)
P 		53.6
(0.1)
P 		33.6
(-1.5)
P 		15.5
(-3)
P 		35.4
(-1.4)
P 		41.9
(-0.9)
P 		74
avr 72.6
(3) 		62.5
(1.7) 		26.7
(-3) 		28.2
(-2.8) 		38.4
(-1.5) 		33.5
(-2.1) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8388
Sequence Type Exemplar sequence
Representative Public ID Y73F8A.5 NCBI
Target Description Y73F8A.5 /REP_DB=WormBase Gene ID /WP=CE25599 /TR=Q9NA40 /GB=CAB70224.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070440(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070440 NCBI Caenorhabditis elegans Y73F8A.5 (Y73F8A.5) mRNA, complete cds. 11/11 None
SNAP00000030806 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15261654:15268769:1 11/11 None
GENEFINDER00000030897 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15261654:15268769:1 11/11 None
Y73F8A.5 ENSEMBL cdna:known chromosome:CEL140:IV:15259875:15269007:1 gene:Y73F8A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15261823-15268775(+) 99.77 99.77
Public Domain and Genome References
Gene Title
Ensembl Y73F8A.5
Entrez Gene 178425 Entrez gene
SwissProt Q9NA40 EMBL-EBI
WormBase CE25599 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.3621.1.S1_S_AT similar to Y73F8A.5 cfa
CHICKEN:GGA.17665.1.S1_S_AT similar to RIKEN cDNA 9330182L06 gga
CHICKEN:GGAAFFX.11331.1.S1_AT similar to RIKEN cDNA 9330182L06 gga
CHICKEN:GGAAFFX.21985.1.S1_AT similar to RIKEN cDNA 9330182L06 gga
HG-U133_PLUS_2:244317_AT KIAA1324-like hs
HG-U133B:244317_AT KIAA1324-like hs
HU35KSUBB:RC_W60844_AT KIAA1324-like hs
U133_X3P:HS.31570.1.S1_3P_AT KIAA1324-like hs
U133_X3P:HS.31570.0.A1_3P_AT KIAA1324-like hs
HG-U133_PLUS_2:235301_AT KIAA1324-like hs
HG-U133B:235301_AT KIAA1324-like hs
HG-U95B:44574_AT KIAA1324-like hs
HG-U95D:70021_AT KIAA1324-like hs
MG-U74CV2:135782_AT RIKEN cDNA 9330182L06 gene mm
MOE430B:1438324_AT RIKEN cDNA 9330182L06 gene mm
MOUSE430_2:1438324_AT RIKEN cDNA 9330182L06 gene mm
MG-U74BV2:108922_AT RIKEN cDNA 9330182L06 gene, mRNA (cDNA clone IMAGE:5361249) mm
MOE430B:1435583_AT RIKEN cDNA 9330182L06 gene, mRNA (cDNA clone IMAGE:5361249) mm
MOUSE430_2:1435583_AT RIKEN cDNA 9330182L06 gene, mRNA (cDNA clone IMAGE:5361249) mm
MU19KSUBA:TC21307_AT RIKEN cDNA 9330182L06 gene, mRNA (cDNA clone IMAGE:5361249) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB70224 Hypothetical protein Y73F8A.5 [Caenorhabditis elegans] ref|NP_502841.1| Y73F8A.5 [Caenorhabditis elegans] 0.0
blast CAE68091 Hypothetical protein CBG13728 [Caenorhabditis briggsae] 0.0
blast XP_532448 PREDICTED: similar to Y73F8A.5 [Canis familiaris] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502841.1 1 922-941
Y73F8A.5 1 922-941
SNAP00000030806 1 927-946
GENEFINDER00000030897 1 927-946
Sequence
Target Sequence 
>C. ELEGANS:184137_AT
gccagtttcaacaatttcaccagcatgtccaaacggcaatcaattggtagttgtagctcg
atgtgttccaaccaaaaaacaaatggaaatgcgtcttccacataattgtcccgatggaac
ttgtgatggatgtctttttgtgattattatggaaactgcacaggcgtgtccagtctgtga
atcaaatgattatgagacaattaatggagaatgtcttaatgggaaacagactattcatag
tattcctaaaaaacattgcgtaataaccggtgcagcatcacagagcaaagaagtcgcatg
cagtgcatttacagcattccaaagagcaattctctcaattctcgtgctatcaatgatatt
cctttcaattggatttgtgtgtatttgtagaagaaatcgacggttagaatataaatatac
acgacttattgagtcacatactggagaattacctgctgttgagacttgtggattggatga
ggatgaggatgatgatgagctacaggatcgtgtaatattctcaaaagggcgtcgatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGTTTCAACAATTTCACCAGCA 608 279 2451 Antisense
TTCACCAGCATGTCCAAACGGCAAT 24 683 2466 Antisense
TGTAGCTCGATGTGTTCCAACCAAA 618 557 2502 Antisense
GTCTTCCACATAATTGTCCCGATGG 271 469 2543 Antisense
GAAACTGCACAGGCGTGTCCAGTCT 281 357 2602 Antisense
AGGCGTGTCCAGTCTGTGAATCAAA 66 55 2612 Antisense
TAACCGGTGCAGCATCACAGAGCAA 515 635 2714 Antisense
TGCAGTGCATTTACAGCATTCCAAA 415 577 2749 Antisense
TTCTCTCAATTCTCGTGCTATCAAT 238 693 2780 Antisense
GAATTACCTGCTGTTGAGACTTGTG 313 325 2896 Antisense
ATATTCTCAAAAGGGCGTCGATCAG 447 19 2965 Antisense
Sequence Source Affymetrix Proprietary Database