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[184136_at]

Description W01C8.1 /REP_DB=WormBase Gene ID /WP=CE05029 /TR=Q9GYG6 /GB=AAG00023.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 6.8
(-2.9)
A 		18.9
(-2.2)
A 		5.2
(-3)
A 		110.5
(3)
P 		105
B 38.9
(1.6)
A 		6.3
(-3)
A 		37.8
(1.5)
A 		48.4
(3)
A 		42
C 40.2
(-1.3)
A 		3.9
(-3)
A 		3.6
(-3)
A 		131.1
(3)
M 		128
avr 28.6
(-1.7) 		9.7
(-3) 		15.5
(-2.6) 		96.7
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 23.5
(-2.5)
A 		26
(-1.9)
A 		47.5
(3)
A 		21.2
(-3)
A 		45
(2.4)
A 		24.4
(-2.3)
A 		26
B 12.3
(-1.6)
A 		14.2
(-0.9)
A 		8.8
(-3)
A 		12.4
(-1.6)
A 		21.9
(2.2)
A 		23.9
(3)
A 		15
C 29.2
(1.4)
A 		23.2
(0.4)
A 		2.7
(-3)
A 		2.4
(-3)
A 		31.4
(1.8)
A 		38.8
(3)
A 		36
avr 21.7
(-0.2) 		21.1
(-0.4) 		19.7
(-0.8) 		12
(-3) 		32.8
(3) 		29
(1.9) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.5
(-2.6)
A 		4.1
(-1.9)
A 		1.4
(-3)
A 		16.2
(3)
P 		15
B 12.4
(3)
A 		1.6
(-3)
A 		8.8
(1)
A 		10.3
(1.8)
A 		11
C 13.3
(0.5)
A 		1.1
(-3)
A 		1.2
(-3)
A 		22.1
(3)
M 		21
avr 9.4
(0.1) 		2.3
(-3) 		3.8
(-2.4) 		16.2
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.3
(-3)
A 		9.2
(0.2)
A 		10.3
(0.9)
A 		5.4
(-2.3)
A 		13.6
(3)
A 		5.9
(-2)
A 		9
B 4.3
(-1.1)
A 		4.7
(-0.7)
A 		2.1
(-3)
A 		3.3
(-1.9)
A 		8.9
(3)
A 		8.9
(3)
A 		7
C 10.8
(1.9)
A 		7.1
(0.2)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		10.2
(1.7)
A 		13
(3)
A 		13
avr 6.5
(-0.4) 		7
(-0) 		4.4
(-2) 		3.1
(-3) 		10.9
(3) 		9.3
(1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184136_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16545
Sequence Type Exemplar sequence
Representative Public ID W01C8.1 NCBI
Target Description W01C8.1 /REP_DB=WormBase Gene ID /WP=CE05029 /TR=Q9GYG6 /GB=AAG00023.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076557(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076557 NCBI Caenorhabditis elegans W01C8.1 (W01C8.1) mRNA, complete cds. 11/11 None
SNAP00000032378 ENSEMBL cdna:SNAP chromosome:CEL140:X:5693400:5694365:1 11/11 None
W01C8.1 ENSEMBL cdna:known chromosome:CEL140:X:5693473:5694365:1 gene:W01C8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5693472-5694365(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W01C8.1
Entrez Gene 189087 Entrez gene
SwissProt Q9GYG6 EMBL-EBI
WormBase CE05029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508958 W01C8.1 [Caenorhabditis elegans] gb|AAG00023.1| Hypothetical protein W01C8.1 [Caenorhabditis elegans] 4.0E-41
blast NP_508958 W01C8.1 [Caenorhabditis elegans] gb|AAG00023.1| Hypothetical protein W01C8.1 [Caenorhabditis elegans] 4.0E-36
blast CAE68787 Hypothetical protein CBG14732 [Caenorhabditis briggsae] 3.0E-17
blast CAE68787 Hypothetical protein CBG14732 [Caenorhabditis briggsae] 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:184136_AT
aaatttggcggacaccctgaagagaaacgtctaccacccatgattttatttgtgaaaaat
tacctccgacactactcgattgcattgattgatcagacgatagacttggaatccagcaat
tcattctcaacaaatgagaataccatggaaagtctaatagagtcgttcaggaagctttac
gagtcatacatgtctgtatttcaagaagatcaaatttcacaatatgccaacttagcgtta
caa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTTGGCGGACACCCTGAAGAGA 493 113 37 Antisense
TGAAGAGAAACGTCTACCACCCATG 447 575 54 Antisense
GTCTACCACCCATGATTTTATTTGT 612 467 65 Antisense
GAAAAATTACCTCCGACACTACTCG 693 353 90 Antisense
GACACTACTCGATTGCATTGATTGA 443 367 104 Antisense
CAGACGATAGACTTGGAATCCAGCA 161 205 130 Antisense
AATCCAGCAATTCATTCTCAACAAA 608 167 146 Antisense
AATAGAGTCGTTCAGGAAGCTTTAC 249 169 192 Antisense
GAAGCTTTACGAGTCATACATGTCT 379 341 207 Antisense
GATCAAATTTCACAATATGCCAACT 409 421 244 Antisense
ACAATATGCCAACTTAGCGTTACAA 392 111 255 Antisense
Sequence Source Affymetrix Proprietary Database