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[184133_at]

Description K12B6.2 /REP_DB=WormBase Gene ID /WP=CE12166 /TR=O16382 /GB=AAB65917.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.7
(2.4)
A 		11.3
(3)
A 		5.3
(-3)
A 		7
(-1.3)
A 		6
B 2.9
(-1.2)
A 		4
(0.2)
A 		6.3
(3)
A 		1.4
(-3)
A 		5
C 2.4
(-2.5)
A 		1.9
(-3)
A 		8
(3)
A 		5
(0)
A 		6
avr 5.3
(-0.6) 		5.7
(0.6) 		6.5
(3) 		4.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 6.5
(-1.6)
A 		3.9
(-2.4)
A 		1.9
(-3)
A 		21.9
(3)
A 		5
(-2.1)
A 		2.1
(-2.9)
A 		20
B 2.6
(-0.2)
A 		1.7
(-2.3)
A 		4
(3)
A 		2.8
(0.2)
A 		1.4
(-3)
A 		3.5
(1.8)
A 		3
C 4.5
(-0.7)
A 		4.9
(-0.2)
A 		3.7
(-1.6)
A 		2.4
(-3)
A 		7.8
(3)
A 		3.3
(-2)
A 		5
avr 4.5
(-1.5) 		3.5
(-2.5) 		3.2
(-2.8) 		9
(3) 		4.7
(-1.3) 		3
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3.9
(3)
A 		2.5
(0.1)
A 		1.4
(-2.2)
A 		1
(-3)
A 		3
B 0.9
(0)
A 		1
(0.5)
A 		1.5
(3)
A 		0.3
(-3)
A 		1
C 0.8
(-2.5)
A 		0.6
(-3)
A 		2.8
(3)
A 		0.8
(-2.5)
A 		2
avr 1.9
(3) 		1.4
(0.5) 		1.9
(3) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.2
(-2.1)
A 		1.4
(-1.8)
A 		0.4
(-3)
A 		5.6
(3)
A 		1.5
(-1.7)
A 		0.5
(-2.9)
A 		5
B 0.9
(-0.4)
A 		0.6
(-3)
A 		1
(0.4)
A 		0.7
(-2.1)
A 		0.6
(-3)
A 		1.3
(3)
A 		1
C 1.7
(0.6)
A 		1.5
(0)
A 		0.9
(-1.8)
A 		0.5
(-3)
A 		2.5
(3)
A 		1.1
(-1.2)
A 		2
avr 1.3
(-1) 		1.2
(-1.4) 		0.8
(-3) 		2.3
(3) 		1.5
(-0.2) 		1
(-2.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184133_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11402
Sequence Type Exemplar sequence
Representative Public ID K12B6.2 NCBI
Target Description K12B6.2 /REP_DB=WormBase Gene ID /WP=CE12166 /TR=O16382 /GB=AAB65917.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072205
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000011410 ENSEMBL cdna:SNAP chromosome:CEL140:V:6284016:6287382:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072205 6/11 Cross Hyb Matching Probes None
GENEFINDER00000011418 8/11 Cross Hyb Matching Probes None
K12B6.2 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6284015-6287115(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE71859 Hypothetical protein CBG18903 [Caenorhabditis briggsae] 0.0
blast AAB65917 Hypothetical protein K12B6.2 [Caenorhabditis elegans] ref|NP_504606.2| K12B6.2 [Caenorhabditis elegans] 0.0
blast EAL31105 GA10888-PA [Drosophila pseudoobscura] 5.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000011410 4 38-57,77-99,494-516,583-605
Sequence
Target Sequence 
>C. ELEGANS:184133_AT
gattcggttgtcgagtcggctagacaacaggttaagcagaaagcgagtgctcccgctgga
ctcaatattactggtgaaggagttctcgcagattttctcaagacaatgacatcgactaat
gaaacactggaagttgatcagacgctttccaatgagcattgtttgctgaagccattggca
ccgaatacggatattctgatctactggctggttgtgttttcatttgcaattcgtagaatt
gtgctcaactactttctccccttcatgttcccaatgcgatcaaaagttcgactcattcaa
ttttataacaaagttcataaaatcatcattttcgcgataacacacaactttttcagtgtc
tggttaaccgtgagaagcatagaaaagaagcaagagcacggattcgttttatggtggatc
gaagaagaatcgagacgctgcgaaaagggtattctgaatttgcaaagtgtttatcgtatg
agttttgaattccagagaattttcggctggaggctcttttctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGGTTGTCGAGTCGGCTAGAC 47 431 1576 Antisense
AAGCAGAAAGCGAGTGCTCCCGCTG 453 151 1609 Antisense
CTCCCGCTGGACTCAATATTACTGG 249 231 1625 Antisense
GAGTTCTCGCAGATTTTCTCAAGAC 684 397 1655 Antisense
GAAGTTGATCAGACGCTTTCCAATG 198 337 1705 Antisense
GATATTCTGATCTACTGGCTGGTTG 246 427 1765 Antisense
CTGGCTGGTTGTGTTTTCATTTGCA 621 241 1779 Antisense
AGAATTGTGCTCAACTACTTTCTCC 605 75 1810 Antisense
CCTTCATGTTCCCAATGCGATCAAA 604 269 1835 Antisense
TCGCGATAACACACAACTTTTTCAG 512 597 1907 Antisense
TTTCGGCTGGAGGCTCTTTTCTGAA 264 671 2076 Antisense
Sequence Source Affymetrix Proprietary Database