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[184132_at]

Description F36H5.8 /REP_DB=WormBase Gene ID /WP=CE09965 /TR=P91294 /GB=AAK31519.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 6.6
(-2.3)
A 		4.6
(-2.7)
A 		3
(-3)
A 		33.4
(3)
A 		30
B 3.5
(-3)
A 		7.3
(-2.6)
A 		7.4
(-2.6)
A 		65.2
(3)
A 		62
C 5
(-2.9)
A 		3.2
(-3)
A 		6.8
(-2.8)
A 		90.7
(3)
A 		88
avr 5
(-3) 		5
(-3) 		5.7
(-2.9) 		63.1
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 5.9
(-2.7)
A 		2.9
(-3)
A 		4.4
(-2.9)
A 		4.6
(-2.9)
A 		20.4
(-1.5)
A 		73
(3)
A 		70
B 5.5
(-2.6)
A 		2.5
(-3)
A 		6.4
(-2.4)
A 		22.2
(-0.2)
A 		26.3
(0.4)
A 		44.9
(3)
A 		42
C 7.7
(-1.4)
A 		4.4
(-2.5)
A 		4.1
(-2.6)
A 		11.2
(-0.2)
A 		2.9
(-3)
A 		20.8
(3)
A 		18
avr 6.4
(-2.6) 		3.3
(-3) 		5
(-2.8) 		12.7
(-1.7) 		16.5
(-1.2) 		46.2
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.4
(-0.7)
A 		1
(-2.7)
A 		0.8
(-3)
A 		4.9
(3)
A 		4
B 1.1
(-3)
A 		1.8
(-2.7)
A 		1.7
(-2.7)
A 		13.9
(3)
A 		13
C 1.6
(-2.7)
A 		0.9
(-3)
A 		2.4
(-2.4)
A 		15.3
(3)
A 		14
avr 1.7
(-2.7) 		1.2
(-3) 		1.6
(-2.8) 		11.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1
(-3)
A 		1
(-3)
A 		1.2
(-2.9)
A 		6.2
(-1.1)
A 		17.8
(3)
A 		17
B 1.9
(-2.6)
A 		0.8
(-3)
A 		1.6
(-2.7)
A 		5.9
(-1.1)
A 		10.7
(0.7)
A 		16.7
(3)
A 		16
C 2.9
(-1)
A 		1.3
(-2.6)
A 		1
(-2.9)
A 		2.2
(-1.7)
A 		0.9
(-3)
A 		7
(3)
A 		6
avr 2
(-2.5) 		1
(-3) 		1.2
(-2.9) 		3.1
(-2) 		5.9
(-0.7) 		13.8
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5110
Sequence Type Exemplar sequence
Representative Public ID F36H5.8 NCBI
Target Description F36H5.8 /REP_DB=WormBase Gene ID /WP=CE09965 /TR=P91294 /GB=AAK31519.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061666(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061666 NCBI Caenorhabditis elegans F36H5.8 (F36H5.8) mRNA, complete cds. 11/11 None
SNAP00000028514 ENSEMBL cdna:SNAP chromosome:CEL140:II:1748385:1749962:-1 11/11 None
GENEFINDER00000028534 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1746220:1750662:-1 10/11 None
F36H5.8 ENSEMBL cdna:known chromosome:CEL140:II:1748381:1751600:-1 gene:F36H5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1748383-1751599(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H5.8
Entrez Gene 185386 Entrez gene
SwissProt P91294 EMBL-EBI
WormBase CE09965 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8233 peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31519 Hypothetical protein F36H5.8 [Caenorhabditis elegans] ref|NP_494067.1| F36H5.8 [Caenorhabditis elegans] 0.0
blast AAK31519 Hypothetical protein F36H5.8 [Caenorhabditis elegans] ref|NP_494067.1| F36H5.8 [Caenorhabditis elegans] 1.0E-170
blast T25737 hypothetical protein F36H5.7 - Caenorhabditis elegans 1.0E-123
blast CAA99904 Hypothetical protein R11D1.6 [Caenorhabditis elegans] ref|NP_506177.1| Seven TM Receptor family member (str-181) [Caenorhabditis elegans] 3.0E-74
blast AAK31403 Hypothetical protein C08F1.3 [Caenorhabditis elegans] ref|NP_494079.1| C08F1.3 [Caenorhabditis elegans] 5.0E-66
blast AAC26314 Hypothetical protein T08E11.6 [Caenorhabditis elegans] ref|NP_494083.1| T08E11.6 [Caenorhabditis elegans] 2.0E-61
blast AAK31403 Hypothetical protein C08F1.3 [Caenorhabditis elegans] ref|NP_494079.1| C08F1.3 [Caenorhabditis elegans] 2.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.1E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000028534 5 395-412,424-443,470-492,512-534,575-597
Sequence
Target Sequence 
>C. ELEGANS:184132_AT
gatggcttttacagatccttaatcggattgcacatcaaaacccttgaactcaaaggaacc
tattcgagaagtatccaactgtttggttctctttccaatgtggatacgatagtgttggac
gttgaacttgtgcaaacaactgactatcaacgtatggttgttctgaatcacactaagttg
gtagagacaagaactaatagggtgaaattttcactgaacgatttactggcttcgaatgca
tcgtttctgcaattcaccaacttgcgcatcccggatactcaactcaatttgttcctcaaa
cattggatagccgggtcgaatcaaagacaggaaggcttctctctgacaaaagaacatgat
gagcaaagctacaaccaatcggttattctcaaaggcatcgagactcgaccagcggtgcga
agatcggaacatcataagttcgatgagatatttacactcccgcagtacagccggactctt
gacattacaaattgtgatggagtggaggcaacggtttatttcggaaaaagttggttgttc
aacctaggacctgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCTTTTACAGATCCTTAATCG 647 405 1372 Antisense
TCGGATTGCACATCAAAACCCTTGA 379 603 1394 Antisense
ATCCAACTGTTTGGTTCTCTTTCCA 550 39 1444 Antisense
ACTGGCTTCGAATGCATCGTTTCTG 571 95 1596 Antisense
ATCGTTTCTGCAATTCACCAACTTG 362 35 1611 Antisense
CATCCCGGATACTCAACTCAATTTG 36 211 1638 Antisense
GACAGGAAGGCTTCTCTCTGACAAA 323 369 1697 Antisense
GACTCGACCAGCGGTGCGAAGATCG 264 375 1773 Antisense
TGAGATATTTACACTCCCGCAGTAC 477 567 1815 Antisense
GTACAGCCGGACTCTTGACATTACA 359 461 1836 Antisense
TGGTTGTTCAACCTAGGACCTGTAA 339 543 1903 Antisense
Sequence Source Affymetrix Proprietary Database