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[184131_at]

Description F48B9.3 /REP_DB=WormBase Gene ID /WP=CE04611 /TR=Q20553 /GB=AAA81749.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 6.3
(-3)
A 		33.4
(2.1)
A 		14.8
(-1.4)
A 		38
(3)
A 		32
B 42.5
(3)
A 		35.3
(1.8)
A 		8
(-2.7)
A 		6.4
(-3)
A 		36
C 19.8
(-0.2)
A 		21.4
(0.1)
A 		4.6
(-3)
A 		37.1
(3)
A 		33
avr 22.9
(1) 		30
(3) 		9.1
(-3) 		27.2
(2.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 13.2
(-1.2)
A 		17.2
(-0.4)
A 		4.8
(-3)
A 		33.2
(3)
A 		30.1
(2.3)
A 		15
(-0.8)
A 		28
B 13.1
(-1)
A 		8.3
(-2.1)
A 		4.3
(-3)
A 		6
(-2.6)
A 		30.2
(3)
A 		17.7
(0.1)
A 		26
C 4.4
(-3)
A 		26.3
(2.3)
A 		6.5
(-2.5)
A 		29.3
(3)
A 		4.8
(-2.9)
A 		22.7
(1.4)
A 		25
avr 10.2
(-1.3) 		17.3
(1.1) 		5.2
(-3) 		22.8
(3) 		21.7
(2.6) 		18.5
(1.5) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.3
(-3)
A 		7.3
(3)
A 		3.9
(-1.1)
A 		5.6
(1)
A 		5
B 13.5
(3)
A 		8.7
(0.6)
A 		1.8
(-2.8)
A 		1.4
(-3)
A 		12
C 6.5
(3)
A 		6.1
(2.5)
A 		1.6
(-3)
A 		6.3
(2.8)
A 		5
avr 7.4
(3) 		7.4
(3) 		2.4
(-3) 		4.4
(-0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.4
(-2)
A 		6.1
(0.8)
A 		1
(-3)
A 		8.4
(2.5)
A 		9.1
(3)
A 		3.7
(-1)
A 		8
B 4.5
(-1.1)
A 		2.8
(-2)
A 		1
(-3)
A 		1.6
(-2.7)
A 		12.3
(3)
A 		6.6
(-0)
A 		11
C 1.6
(-2.9)
A 		8
(3)
A 		1.7
(-2.8)
A 		5.9
(1.1)
A 		1.5
(-3)
A 		7.6
(2.6)
A 		7
avr 2.8
(-1.5) 		5.6
(1.1) 		1.2
(-3) 		5.3
(0.8) 		7.6
(3) 		6
(1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184131_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18069
Sequence Type Exemplar sequence
Representative Public ID F48B9.3 NCBI
Target Description F48B9.3 /REP_DB=WormBase Gene ID /WP=CE04611 /TR=Q20553 /GB=AAA81749.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075997(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075997 NCBI Caenorhabditis elegans F48B9.3 (F48B9.3) mRNA, complete cds. 11/11 None
F48B9.3 ENSEMBL cdna:known chromosome:CEL140:X:2165103:2165932:1 gene:F48B9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005472 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2165102-2165932(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48B9.3
Entrez Gene 185965 Entrez gene
SwissProt Q20553 EMBL-EBI
WormBase CE04611 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81749 Hypothetical protein F48B9.3 [Caenorhabditis elegans] ref|NP_508398.1| F48B9.3 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508398.1 1 7-29
F48B9.3 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184131_AT
tgcagtctccttcatcaaacattttattctatattctagcagtattcctcttttctgtca
ctgactcattgaactttttatcaggaaatttgacggaagcagagaacttagagagattag
ccacatgtggaagtagccagcagaaagcaaacgagtatggtggaatatttttgaaagacg
aaactagttcacattttcggaaatatcttatcgctctttcgtctagacatttagttctaa
accctggctcaaaaacattaggcttcatttacaagaaagaagaatgtcgaaataacatac
aaaaattcaaaatcaactcaaaccagcattggccggggaaactcaatcatgagaaaacgg
cgtattacattggttcatgtgaagaagactctccacactacctgggagttgtttttgtta
agatgaagtaccgagtacttgttcaaaaccgctcctattgtgctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGTCTCCTTCATCAAACATTTT 654 575 14 Antisense
TATTCTAGCAGTATTCCTCTTTTCT 20 665 45 Antisense
CCTCTTTTCTGTCACTGACTCATTG 544 267 60 Antisense
TTATCGCTCTTTCGTCTAGACATTT 184 681 221 Antisense
CATTTAGTTCTAAACCCTGGCTCAA 591 213 241 Antisense
AACTCAAACCAGCATTGGCCGGGGA 641 1 328 Antisense
AAACGGCGTATTACATTGGTTCATG 199 127 368 Antisense
GTGAAGAAGACTCTCCACACTACCT 645 469 392 Antisense
CACACTACCTGGGAGTTGTTTTTGT 440 193 407 Antisense
TACCGAGTACTTGTTCAAAACCGCT 283 561 442 Antisense
TCAAAACCGCTCCTATTGTGCTACA 568 629 456 Antisense
Sequence Source Affymetrix Proprietary Database