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[184130_at]

Description F20D6.2 /REP_DB=WormBase Gene ID /WP=CE07107 /TR=Q19652 /GB=AAB37047.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 26      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 7.8
(-3)
A 		20.7
(2.9)
A 		15.4
(0.5)
A 		20.9
(3)
A 		13
B 6.4
(-2.2)
A 		16.7
(3)
A 		4.7
(-3)
A 		5.6
(-2.6)
A 		12
C 5.2
(-3)
A 		7
(-2.6)
A 		12.4
(-1.3)
A 		30.7
(3)
A 		26
avr 6.5
(-3) 		14.8
(1) 		10.8
(-1) 		19.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 6
(-3)
A 		4.1
(-3)
A 		4.5
(-3)
A 		320.1
(3)
P 		250.6
(1.7)
P 		8.3
(-2.9)
A 		316
B 11.5
(-2.9)
A 		6.4
(-3)
A 		12
(-2.9)
A 		304.5
(2.8)
P 		316.8
(3)
P 		8.8
(-3)
A 		310
C 9.8
(-2.9)
A 		4.7
(-3)
A 		12
(-2.9)
A 		303.4
(2.8)
P 		315
(3)
P 		5.7
(-3)
A 		310
avr 9.1
(-2.9) 		5.1
(-3) 		9.5
(-2.9) 		309.3
(3) 		294.1
(2.7) 		7.6
(-3) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.8
(-3)
A 		4.5
(3)
A 		4
(1.2)
A 		3.1
(-1.9)
A 		2
B 2
(-1.2)
A 		4.1
(3)
A 		1.1
(-3)
A 		1.2
(-2.8)
A 		3
C 1.7
(-3)
A 		2
(-2.5)
A 		4.3
(1.5)
A 		5.2
(3)
A 		4
avr 2.2
(-3) 		3.5
(3) 		3.1
(1.2) 		3.2
(1.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.4
(-3)
A 		1
(-3)
A 		81.2
(3)
P 		75.6
(2.6)
P 		2
(-2.9)
A 		80
B 4
(-2.9)
A 		2.1
(-3)
A 		2.9
(-3)
A 		80.6
(0.7)
P 		128.7
(3)
P 		3.3
(-2.9)
A 		127
C 3.6
(-2.9)
A 		1.4
(-3)
A 		3.1
(-2.9)
A 		61
(0.6)
P 		101.9
(3)
P 		1.9
(-3)
A 		101
avr 2.9
(-2.9) 		1.6
(-3) 		2.3
(-3) 		74.3
(1.3) 		102.1
(3) 		2.4
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11397
Sequence Type Exemplar sequence
Representative Public ID F20D6.2 NCBI
Target Description F20D6.2 /REP_DB=WormBase Gene ID /WP=CE07107 /TR=Q19652 /GB=AAB37047.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072708(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072708 NCBI Caenorhabditis elegans F20D6.2 (F20D6.2) mRNA, complete cds. 11/11 None
SNAP00000033162 ENSEMBL cdna:SNAP chromosome:CEL140:V:8188795:8189910:1 11/11 None
GENEFINDER00000033166 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8186167:8189910:1 11/11 None
F20D6.2 ENSEMBL cdna:known chromosome:CEL140:V:8188630:8189910:1 gene:F20D6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8188630-8189911(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20D6.2
Entrez Gene 184723 Entrez gene
SwissProt Q19652 EMBL-EBI
WormBase CE07107 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37047 Hypothetical protein F20D6.2 [Caenorhabditis elegans] ref|NP_505109.1| F20D6.2 [Caenorhabditis elegans] 1.0E-179
blast AAB37049 Serpin protein 8 [Caenorhabditis elegans] ref|NP_505108.1| SeRPin family member (srp-8) [Caenorhabditis elegans] 1.0E-177
blast AAB37047 Hypothetical protein F20D6.2 [Caenorhabditis elegans] ref|NP_505109.1| F20D6.2 [Caenorhabditis elegans] 1.0E-162
blast CAE66110 Hypothetical protein CBG11330 [Caenorhabditis briggsae] 1.0E-152
blast CAE66110 Hypothetical protein CBG11330 [Caenorhabditis briggsae] 1.0E-142
blast CAE66110 Hypothetical protein CBG11330 [Caenorhabditis briggsae] 1.0E-141
blast CAB00870 Hypothetical protein R09H10.1 [Caenorhabditis elegans] ref|NP_501960.1| R09H10.1 [Caenorhabditis elegans] 3.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 6.1E-49
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 6.1E-49
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 6.1E-49
Pfam IPR000215 EMBL-EBI Serpin 6.7E-8
Pfam IPR000215 EMBL-EBI Serpin 1.7E-20
Sequence
Target Sequence 
>C. ELEGANS:184130_AT
gaattgctcgattatttcacttggaattggaaaagatgtgaaagcagaaaagaaaatgaa
agcattaatgcccagctgtaacttttttggagctgatccggttgatgaagataacaatga
acttttttcaagttttgggaaatttttcaatatggcagttggggataggaatggaagttt
tcgatcatatgttctggaagaaatttatagatatcaagaagttttgacaatcgatttagt
tacgtttattaaagcaaatgtccgacagcaaacaattgatcaacttatgatagatattga
acatgccgagtatcccgtgttccctttcatagaggaaaagggccagctggaagataatgg
aattattgtttgtcagattaacattgaaatccacagccccatcgacgaagatcgtgaaac
gtttgccaactttttgagaaaaaattttgtgactcatcagtggatatttataaactcgga
aattcacccatacttcaaacatatcagactcttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGCTCGATTATTTCACTTGGA 62 325 303 Antisense
GCATTAATGCCCAGCTGTAACTTTT 83 307 364 Antisense
AACTTTTTTGGAGCTGATCCGGTTG 42 135 382 Antisense
GAAGTTTTCGATCATATGTTCTGGA 428 337 476 Antisense
ATTGAACATGCCGAGTATCCCGTGT 7 3 598 Antisense
TCCCGTGTTCCCTTTCATAGAGGAA 635 597 615 Antisense
TTAACATTGAAATCCACAGCCCCAT 500 681 680 Antisense
CACAGCCCCATCGACGAAGATCGTG 708 195 694 Antisense
GATCGTGAAACGTTTGCCAACTTTT 172 415 712 Antisense
AACTCGGAAATTCACCCATACTTCA 398 345 775 Antisense
ACTTCAAACATATCAGACTCTTCAT 582 101 794 Antisense
Sequence Source Affymetrix Proprietary Database