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[184129_at]

Description C08F11.1 /REP_DB=WormBase Gene ID /WP=CE17379 /TR=Q9U3Q9 /GB=CAB62780.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 20      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 33      6grp_total > 40      4grp_total > 61      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 622
1 2 3 4 range
A 610.6
(3)
P 		558.4
(2.3)
P 		550.8
(2.2)
P 		164.9
(-3)
P 		446
B 507.3
(1.8)
P 		562.6
(2.9)
P 		565.2
(3)
P 		283.2
(-3)
P 		282
C 786.7
(3)
P 		588
(0.8)
P 		631.4
(1.3)
P 		237.6
(-3)
P 		549
avr 634.9
(3) 		569.7
(2) 		582.5
(2.2) 		228.6
(-3) 		406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1556
1 2 3 4 5 6 range
A 1527.6
(0.4)
P 		1580.6
(0.6)
P 		2204.8
(3)
P 		1705.7
(1.1)
P 		884.4
(-2.1)
P 		649.2
(-3)
P 		1556
B 1496
(1.8)
P 		1642.5
(3)
P 		1644.3
(3)
P 		1623
(2.8)
P 		872.6
(-3)
P 		987.4
(-2.1)
P 		772
C 1442.4
(0.1)
P 		1614.8
(1.2)
P 		1916.3
(3)
P 		1668.8
(1.5)
P 		936.9
(-3)
P 		1198.3
(-1.4)
P 		979
avr 1488.7
(0.5) 		1612.6
(1.2) 		1921.8
(3) 		1665.8
(1.5) 		898
(-3) 		945
(-2.7) 		1024
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 222.3
(3)
P 		121.2
(-0.1)
P 		144
(0.6)
P 		24.1
(-3)
P 		198
B 161.8
(3)
P 		139
(1.7)
P 		131
(1.2)
P 		60.4
(-3)
P 		101
C 260.4
(3)
P 		169.1
(0.5)
P 		220.1
(1.9)
P 		40.1
(-3)
P 		220
avr 214.8
(3) 		143.1
(0.5) 		165
(1.3) 		41.5
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 281.6
(-1.2)
P 		562.1
(3)
P 		480.2
(1.8)
P 		432.6
(1.1)
P 		266.9
(-1.4)
P 		158.1
(-3)
P 		404
B 520.5
(2.2)
P 		546.7
(3)
P 		399.3
(-1.6)
P 		429.9
(-0.6)
P 		354.5
(-3)
P 		368.2
(-2.6)
P 		192
C 534.6
(3)
P 		492.7
(1.9)
P 		487.7
(1.8)
P 		335.6
(-2.2)
P 		303.2
(-3)
P 		401.2
(-0.5)
P 		231
avr 445.6
(0.7) 		533.8
(3) 		455.7
(0.9) 		399.4
(-0.6) 		308.2
(-3) 		309.2
(-3) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184129_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9821
Sequence Type Exemplar sequence
Representative Public ID C08F11.1 NCBI
Target Description C08F11.1 /REP_DB=WormBase Gene ID /WP=CE17379 /TR=Q9U3Q9 /GB=CAB62780.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070228 NCBI Caenorhabditis elegans C08F11.1 (C08F11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000042610 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13623824:13625511:1 11/11 None
C08F11.1 ENSEMBL cdna:known chromosome:CEL140:IV:13623824:13625511:1 gene:C08F11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042597 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13623829-13625517(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F11.1
Entrez Gene 178329 Entrez gene
SwissProt Q9U3Q9 EMBL-EBI
WormBase CE17379 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB62780 Hypothetical protein C08F11.1 [Caenorhabditis elegans] ref|NP_502629.1| C08F11.1 [Caenorhabditis elegans] 1.0E-135
blast CAE74553 Hypothetical protein CBG22311 [Caenorhabditis briggsae] 3.0E-84
blast CAA93484 Hypothetical protein F07C6.3 [Caenorhabditis elegans] ref|NP_502438.1| F07C6.3 [Caenorhabditis elegans] 4.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502629.1 1 215-237
C08F11.1 1 215-237
GENEFINDER00000042610 1 215-237
Sequence
Target Sequence 
>C. ELEGANS:184129_AT
tccagaaaattataccacacgccacaaatgccaatacttttgctctagcccagggcttat
tccaaaaccgtggaaaattcgcagtcatgagacaacttgttaacaaatttttcaatcaga
acaaggcaggaaaaccgcaaccaaaaacactttctttgtatgataattccacgtatagca
agcagaaaatgattgcgttggttaataatagacaagcagtcacacagtggtggaaccaag
atatgacgcctggactgaagaagatttacaatgcagctacagcttccacttacaaagacc
tctacgcttactttgacaatcgttacatcaacagtttttcctacacacttgcctactgga
tgcttacagttttgatgaaggacatgtttgatgaaagctcctttaacaaaacatccgacc
taattctggattcattgactgctcgattggagaagaacagtgctattgcatttgaaatct
acacagaggcttttgagaaaaatcataatcaaacattgatgaagggaaaatggtattttg
taagggaaacactagtaaacgtagtgtgtctgacaattcactgtctcgtagcaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAGAAAATTATACCACACGCCAC 96 585 104 Antisense
CACACGCCACAAATGCCAATACTTT 457 195 119 Antisense
GCCCAGGGCTTATTCCAAAACCGTG 699 281 151 Antisense
AATGCAGCTACAGCTTCCACTTACA 512 165 373 Antisense
CTTCCACTTACAAAGACCTCTACGC 170 219 386 Antisense
ACCTCTACGCTTACTTTGACAATCG 608 87 401 Antisense
TCAACAGTTTTTCCTACACACTTGC 279 629 431 Antisense
ACACACTTGCCTACTGGATGCTTAC 337 111 446 Antisense
GCTCCTTTAACAAAACATCCGACCT 7 287 500 Antisense
GGATTCATTGACTGCTCGATTGGAG 667 507 531 Antisense
GACAATTCACTGTCTCGTAGCAACC 24 365 675 Antisense
Sequence Source Affymetrix Proprietary Database