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[184128_s_at]

Description Y45F3A.1 /REP_DB=WormBase Gene ID /WP=CE19164 /TR=Q9XTF1 /GB=CAA21496.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 65      4grp_highest_8_8 > 24      4grp_high_8_8 > 60      6grp_highest_nonorm > 90      6grp_total > 75      4grp_total > 60      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 112.2
(2.9)
P 		82
(-3)
P 		112.8
(3)
P 		104.6
(1.4)
P 		31
B 92.2
(-0)
P 		127.2
(3)
P 		89.7
(-0.2)
P 		57.9
(-3)
P 		69
C 104.2
(-0.8)
P 		103.9
(-0.9)
P 		112.3
(3)
P 		99.5
(-3)
P 		13
avr 102.9
(2.3) 		104.4
(2.8) 		104.9
(3) 		87.3
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 152
(0.1)
P 		128.1
(-2.9)
P 		129.8
(-2.7)
P 		154.5
(0.4)
P 		127.6
(-3)
P 		175.4
(3)
P 		48
B 116.7
(-1.7)
P 		106
(-2.5)
P 		124.4
(-1.1)
P 		145.3
(0.5)
P 		99.4
(-3)
P 		178.8
(3)
P 		79
C 111.4
(-2.1)
P 		101.1
(-2.8)
P 		166.5
(2)
P 		180.3
(3)
P 		98.6
(-3)
P 		172.6
(2.4)
P 		82
avr 126.7
(-1.4) 		111.7
(-2.7) 		140.2
(-0.2) 		160
(1.6) 		108.5
(-3) 		175.6
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 40.8
(3)
P 		17.8
(-2.4)
P 		29.5
(0.3)
P 		15.3
(-3)
P 		26
B 29.4
(2.4)
P 		31.4
(3)
P 		20.8
(-0.3)
P 		12.3
(-3)
P 		19
C 34.5
(1.8)
P 		29.9
(0.5)
P 		39.1
(3)
P 		16.8
(-3)
P 		22
avr 34.9
(3) 		26.4
(0.5) 		29.8
(1.5) 		14.8
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 28
(-3)
P 		45.6
(3)
P 		28.3
(-2.9)
P 		39.2
(0.8)
P 		38.5
(0.6)
P 		42.7
(2)
P 		18
B 40.6
(-1.3)
P 		35.3
(-2.2)
P 		30.2
(-3)
P 		38.5
(-1.6)
P 		40.4
(-1.3)
P 		66.7
(3)
P 		37
C 41.3
(-0.7)
P 		30.8
(-3)
P 		42.4
(-0.4)
P 		36.3
(-1.8)
P 		31.9
(-2.8)
P 		57.8
(3)
P 		27
avr 36.6
(-2.2) 		37.2
(-2) 		33.6
(-3) 		38
(-1.8) 		36.9
(-2.1) 		55.7
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184128_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7816
Sequence Type Exemplar sequence
Representative Public ID Y45F3A.1 NCBI
Target Description Y45F3A.1 /REP_DB=WormBase Gene ID /WP=CE19164 /TR=Q9XTF1 /GB=CAA21496.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066926 NCBI Caenorhabditis elegans Y45F3A.1 (Y45F3A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000038807 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10558144:10558549:-1 10/11 None
Y45F3A.1 ENSEMBL cdna:known chromosome:CEL140:III:10558135:10561576:-1 gene:Y45F3A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10558139-10561563(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F3A.1
Entrez Gene 176475 Entrez gene
SwissProt Q9XTF1 EMBL-EBI
WormBase CE19164 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21496 Hypothetical protein Y45F3A.1 [Caenorhabditis elegans] emb|CAA90319.1| Hypothetical protein Y45F3A.1 [Caenorhabditis elegans] ref|NP_499327.1| Y45F3A.1 [Caenorhabditis elegans] 0.0
blast CAE71447 Hypothetical protein CBG18358 [Caenorhabditis briggsae] 1.0E-124
blast CAA21496 Hypothetical protein Y45F3A.1 [Caenorhabditis elegans] emb|CAA90319.1| Hypothetical protein Y45F3A.1 [Caenorhabditis elegans] ref|NP_499327.1| Y45F3A.1 [Caenorhabditis elegans] 5.0E-72
blast CAE71447 Hypothetical protein CBG18358 [Caenorhabditis briggsae] 9.0E-34
Sequence
Target Sequence 
>C. ELEGANS:184128_S_AT
gagtctctgatattctggatcgcaccaaaagagagccgaaaatgggaattgagtgccgca
agccatacattgtgtcttcggaagcttcttcacttgaagaccttgtcacatcaactggaa
gtctcactcacgatcattttactccggaacatcaattcaaaactggcacagctccgattc
ctactgtagtttttgatgatgttgaagagattggaaaagtggtgaaggttcataaggaag
gatgcccgaagaacaagaagaagaatttgggcccgattgagcattcaaactcgttgattt
cggttaaacagccgtgcaaggttcatgcgaatcagcttccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCTCTGATATTCTGGATCGCAC 657 399 596 Antisense
GGGAATTGAGTGCCGCAAGCCATAC 100 493 639 Antisense
GCAAGCCATACATTGTGTCTTCGGA 176 321 653 Antisense
GTCTTCGGAAGCTTCTTCACTTGAA 327 469 669 Antisense
GAAGACCTTGTCACATCAACTGGAA 225 339 691 Antisense
TCAACTGGAAGTCTCACTCACGATC 438 631 706 Antisense
ACTCACGATCATTTTACTCCGGAAC 93 101 721 Antisense
TCAAAACTGGCACAGCTCCGATTCC 397 629 752 Antisense
CAGCTCCGATTCCTACTGTAGTTTT 701 203 764 Antisense
AATTTGGGCCCGATTGAGCATTCAA 267 175 859 Antisense
AGGTTCATGCGAATCAGCTTCCGAT 573 57 914 Antisense
Sequence Source Affymetrix Proprietary Database