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[184125_at]

Description C05D12.1 /REP_DB=WormBase Gene ID /WP=CE02970 /TR=Q17661 /GB=CAA90757.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_high_8_8 > 46      6grp_highest_nonorm > 91      6grp_total > 92      4grp_total > 49      6grp_highest_sub > 05      6grp_high1_sub > 05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 108.5
(-3)
A 		267
(3)
P 		199.8
(0.5)
P 		165.1
(-0.9)
A 		159
B 150.3
(-3)
P 		345.8
(3)
P 		260.9
(0.4)
P 		165.2
(-2.5)
A 		196
C 149.6
(-3)
P 		210.3
(-1.4)
P 		375
(3)
P 		150.1
(-3)
P 		225
avr 136.1
(-3) 		274.4
(2.8) 		278.6
(3) 		160.1
(-2) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 158.8
(-3)
P 		307.6
(1.4)
P 		177.7
(-2.4)
P 		363.5
(3)
P 		328.4
(2)
P 		207.6
(-1.6)
P 		205
B 201
(-1.6)
P 		179.7
(-2.5)
P 		177
(-2.6)
P 		314
(3)
P 		294.9
(2.2)
P 		166.4
(-3)
P 		148
C 215.6
(-1.6)
P 		166.6
(-3)
P 		273.4
(0)
P 		168.6
(-2.9)
P 		376.7
(3)
P 		195.4
(-2.2)
P 		210
avr 191.8
(-2.9) 		218
(-1.8) 		209.4
(-2.2) 		282
(0.9) 		333.3
(3) 		189.8
(-3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 39.5
(-0.3)
A 		58
(3)
P 		52.2
(2)
P 		24.2
(-3)
A 		34
B 47.9
(-1.5)
P 		85.4
(3)
P 		60.5
(0)
P 		35.2
(-3)
A 		50
C 49.5
(-1.6)
P 		60.5
(-1)
P 		130.7
(3)
P 		25.3
(-3)
P 		105
avr 45.6
(-1) 		68
(1.5) 		81.1
(3) 		28.2
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 29.3
(-3)
P 		109.4
(3)
P 		38.7
(-2.3)
P 		92.2
(1.7)
P 		99.1
(2.2)
P 		50.5
(-1.4)
P 		80
B 69.9
(-0.9)
P 		59.8
(-1.7)
P 		43
(-3)
P 		83.2
(0.1)
P 		119.8
(3)
P 		62.1
(-1.5)
P 		77
C 79.9
(0.1)
P 		50.8
(-1.8)
P 		69.6
(-0.6)
P 		33.9
(-3)
P 		121.9
(3)
P 		65.4
(-0.9)
P 		88
avr 59.7
(-2.1) 		73.3
(-0.8) 		50.4
(-3) 		69.8
(-1.2) 		113.6
(3) 		59.3
(-2.2) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184125_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3521
Sequence Type Exemplar sequence
Representative Public ID C05D12.1 NCBI
Target Description C05D12.1 /REP_DB=WormBase Gene ID /WP=CE02970 /TR=Q17661 /GB=CAA90757.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064031 NCBI Caenorhabditis elegans C05D12.1 (C05D12.1) mRNA, complete cds. 11/11 None
SNAP00000031673 ENSEMBL cdna:SNAP chromosome:CEL140:II:11412367:11415002:-1 11/11 None
GENEFINDER00000031680 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11412367:11415014:-1 11/11 None
C05D12.1 ENSEMBL cdna:known chromosome:CEL140:II:11412158:11415634:-1 gene:C05D12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11412363-11414706(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05D12.1
Entrez Gene 174740 Entrez gene
SwissProt Q17661 EMBL-EBI
WormBase CE36973 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.30687.1.S1_AT similar to stromal cell derived factor receptor 2 cfa
DROSOPHILA_2:1632377_AT dm
DROSGENOME1:141269_AT dm
CHICKEN:GGA.19767.1.A1_AT similar to Stromal cell derived factor receptor 2 gga
CHICKEN:GGAAFFX.26494.1.S1_AT similar to Stromal cell derived factor receptor 2 gga
HU35KSUBC:RC_N26892_AT stromal cell derived factor receptor 2 homolog (mouse) hs
HG-U95B:44507_I_AT stromal cell derived factor receptor 2 homolog (mouse) hs
HG-U95B:44508_R_AT stromal cell derived factor receptor 2 homolog (mouse) hs
MU11KSUBA:C81270_RC_S_AT stromal cell derived factor receptor 2 mm
MU11KSUBA:D50464_S_AT stromal cell derived factor receptor 2 mm
MG-U74AV2:103421_AT stromal cell derived factor receptor 2 mm
MOE430A:1423465_AT stromal cell derived factor receptor 2 mm
MOUSE430A_2:1423465_AT stromal cell derived factor receptor 2 mm
MOUSE430_2:1423465_AT stromal cell derived factor receptor 2 mm
MG-U74CV2:131068_AT Stromal cell derived factor receptor 2, mRNA (cDNA clone MGC:36179 IMAGE:5344922) mm
MOE430B:1459577_AT Stromal cell derived factor receptor 2, mRNA (cDNA clone MGC:36179 IMAGE:5344922) mm
MOUSE430_2:1459577_AT Stromal cell derived factor receptor 2, mRNA (cDNA clone MGC:36179 IMAGE:5344922) mm
MU19KSUBB:TC28837_S_AT Stromal cell derived factor receptor 2, mRNA (cDNA clone MGC:36179 IMAGE:5344922) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6584 catecholamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4500 dopamine beta-monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90757 Hypothetical protein C05D12.1 [Caenorhabditis elegans] ref|NP_496432.2| C05D12.1 [Caenorhabditis elegans] 0.0
blast CAE59512 Hypothetical protein CBG02902 [Caenorhabditis briggsae] 0.0
blast EAA09429 ENSANGP00000003654 [Anopheles gambiae str. PEST] ref|XP_314066.2| ENSANGP00000003654 [Anopheles gambiae str. PEST] 2.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496432.2 6 241-263,291-313,328-350,363-385,400-422,472-494
C05D12.1 6 241-263,291-313,328-350,363-385,400-422,472-494
SNAP00000031673 6 254-276,304-326,341-363,376-398,413-435,485-507
GENEFINDER00000031680 6 262-284,312-334,349-371,384-406,421-443,493-515
Sequence
Target Sequence 
>C. ELEGANS:184125_AT
gcatggtataaccggcttcacggccaccgttttggctctgctacagcctgttttcggatt
tcttcggccttctccaacttctagtattcgaccaattttcaactggggccattggttggt
tggcatgttttcctggtcggttgcttctgccacaatagtactggcactaccaatgggcaa
aactggcctgaatcgactgtatggtcacgttccaaattggattgtgctcggctatattct
cttctttattgcatgcaatctaatattggagattataacaataacgagcaataaaacgaa
aatagaaggaatccagccacatcggtttacagttggtcctatgggaatggcgctggccaa
tttgaatacgccaattaaagatgcaccgattgaggtgcctaaacgcacaaaagcccgtgt
gacagtagtccttgtgcatctcatagtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGGTATAACCGGCTTCACGGCC 69 311 723 Antisense
GCTACAGCCTGTTTTCGGATTTCTT 270 303 762 Antisense
CCTTCTCCAACTTCTAGTATTCGAC 205 269 790 Antisense
TGGTTGGTTGGCATGTTTTCCTGGT 121 549 835 Antisense
GGTTGCTTCTGCCACAATAGTACTG 615 507 861 Antisense
GAATCGACTGTATGGTCACGTTCCA 688 327 912 Antisense
GGATTGTGCTCGGCTATATTCTCTT 248 509 941 Antisense
GAATCCAGCCACATCGGTTTACAGT 570 329 1031 Antisense
GGTCCTATGGGAATGGCGCTGGCCA 539 499 1057 Antisense
AAAGCCCGTGTGACAGTAGTCCTTG 363 125 1132 Antisense
GTAGTCCTTGTGCATCTCATAGTTA 102 457 1147 Antisense
Sequence Source Affymetrix Proprietary Database