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[184124_at]

Description F48C1.8 /REP_DB=WormBase Gene ID /WP=CE10746 /TR=O01575 /GB=AAB52349.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 22      6grp_total > 22      4grp_total > 31      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 144.5
(3)
P 		25.9
(-3)
A 		49.4
(-1.8)
A 		96.4
(0.6)
A 		119
B 131.2
(3)
P 		62.5
(-1.1)
A 		30.1
(-3)
A 		77.7
(-0.2)
P 		101
C 108.1
(3)
P 		59.7
(-1.5)
A 		43.6
(-3)
A 		82.3
(0.6)
P 		65
avr 127.9
(3) 		49.4
(-2.4) 		41
(-3) 		85.5
(0.1) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 137.7
(1.9)
P 		130.5
(1.5)
P 		163.6
(3)
P 		107.5
(0.5)
P 		92.8
(-0.1)
P 		28.3
(-3)
A 		135
B 112.7
(0.5)
P 		158.3
(3)
P 		84.4
(-1)
P 		70.5
(-1.8)
M 		83.4
(-1.1)
P 		48.1
(-3)
A 		110
C 128.3
(3)
P 		109.7
(1.5)
P 		89.1
(-0.1)
M 		53.1
(-3)
A 		76.1
(-1.2)
A 		60.2
(-2.4)
P 		75
avr 126.2
(2.5) 		132.8
(3) 		112.4
(1.6) 		77
(-0.8) 		84.1
(-0.3) 		45.5
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 52.6
(3)
P 		5.6
(-3)
A 		12.9
(-2.1)
A 		14.1
(-1.9)
A 		47
B 41.8
(3)
P 		15.4
(-1.6)
A 		7
(-3)
A 		16.6
(-1.3)
P 		35
C 35.8
(3)
P 		17.2
(-2.1)
A 		15.2
(-2.6)
A 		13.9
(-3)
P 		22
avr 43.4
(3) 		12.7
(-2.8) 		11.7
(-3) 		14.9
(-2.4) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 25.4
(-0.2)
P 		46.4
(3)
P 		35.6
(1.4)
P 		27.3
(0.1)
P 		28
(0.2)
P 		6.9
(-3)
A 		40
B 39.2
(0.7)
P 		52.7
(3)
P 		20.5
(-2.6)
P 		18.7
(-2.9)
M 		33.9
(-0.2)
P 		17.9
(-3)
A 		35
C 47.6
(3)
P 		33.5
(0.7)
P 		22.7
(-1)
M 		10.7
(-3)
A 		24.6
(-0.7)
A 		20.2
(-1.5)
P 		37
avr 37.4
(1.6) 		44.2
(3) 		26.3
(-0.7) 		18.9
(-2.2) 		28.8
(-0.2) 		15
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.972
Sequence Type Exemplar sequence
Representative Public ID F48C1.8 NCBI
Target Description F48C1.8 /REP_DB=WormBase Gene ID /WP=CE10746 /TR=O01575 /GB=AAB52349.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059169(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059169 NCBI Caenorhabditis elegans F48C1.8 (F48C1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000025994 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5333919:5337958:-1 11/11 None
F48C1.8 ENSEMBL cdna:known chromosome:CEL140:I:5333919:5337958:-1 gene:F48C1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025988 8/11 Cross Hyb Matching Probes None
SNAP00000025989 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5333918-5337958(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48C1.8
Entrez Gene 185976 Entrez gene
SwissProt O01575 EMBL-EBI
WormBase CE10746 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52349 Hypothetical protein F48C1.8 [Caenorhabditis elegans] ref|NP_491570.1| F48C1.8 [Caenorhabditis elegans] 1.0E-36
blast AAB52349 Hypothetical protein F48C1.8 [Caenorhabditis elegans] ref|NP_491570.1| F48C1.8 [Caenorhabditis elegans] 3.0E-21
blast CAE66759 Hypothetical protein CBG12113 [Caenorhabditis briggsae] 9.0E-17
blast CAE66759 Hypothetical protein CBG12113 [Caenorhabditis briggsae] 1.0E-16
blast CAE65423 Hypothetical protein CBG10381 [Caenorhabditis briggsae] 3.0E-15
blast CAE66938 Hypothetical protein CBG12330 [Caenorhabditis briggsae] 6.0E-14
Sequence
Target Sequence 
>C. ELEGANS:184124_AT
tgtcggtcgagttccaagattctactgtgattgcccaccgtacccgccaaattatcaatg
gaatcagtgcagtccgatgtatatgttgtcctgtgaagcgcacggaggaggtcatcatgg
tggaggcggaggcggcggatcacatcatcatggcggaggcggaggtggtggaggtcacca
tcatcatggaggaggtggtcactatcatggcggtggcggaggattccatcatcaccacca
ttcaagttattcgggaagttcttctgattacagtagtaacaattactatgggggaggtgg
tggatttgggcttggacggcttttgtttggaggattgttcagaagacccagctactcata
ctatccaagttattatggatatgggaattataatcgcggatattgtagaggtaatttgaa
aattacattattgaaaaaaaatcagtgtgttgccaaagccttgaacattcaaaataaaaa
agaagttgttctttcagtagctcaactcattgattatgttggtggaactcctcgttacta
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGGTCGAGTTCCAAGATTCTAC 25 557 426 Antisense
AAGATTCTACTGTGATTGCCCACCG 4 157 441 Antisense
GTATATGTTGTCCTGTGAAGCGCAC 692 453 504 Antisense
AGCGCACGGAGGAGGTCATCATGGT 87 83 522 Antisense
TGGTCACTATCATGGCGGTGGCGGA 80 553 621 Antisense
TGGCGGAGGATTCCATCATCACCAC 485 545 639 Antisense
TCATCACCACCATTCAAGTTATTCG 285 619 654 Antisense
TGGGCTTGGACGGCTTTTGTTTGGA 299 555 732 Antisense
GATTGTTCAGAAGACCCAGCTACTC 194 435 758 Antisense
ACCCAGCTACTCATACTATCCAAGT 265 91 771 Antisense
TGTTGGTGGAACTCCTCGTTACTAC 5 561 942 Antisense
Sequence Source Affymetrix Proprietary Database