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[184123_at]

Description Y44A6B.1 /REP_DB=WormBase Gene ID /WP=CE18384 /TR=O62449 /GB=CAA16373.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 34      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 7.6
(-3)
A 		79
(3)
A 		49.7
(0.5)
A 		37.6
(-0.5)
A 		71
B 13.5
(-3)
A 		20.9
(-1.5)
A 		16.1
(-2.5)
A 		43.6
(3)
A 		30
C 32.2
(-0.9)
A 		76
(3)
A 		8.7
(-3)
A 		71.4
(2.6)
A 		67
avr 17.8
(-3) 		58.6
(3) 		24.8
(-2) 		50.9
(1.9) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 48.8
(3)
A 		37.9
(1.2)
A 		12.5
(-3)
A 		37.5
(1.1)
A 		27.9
(-0.5)
A 		19.7
(-1.8)
A 		36
B 35.8
(1.6)
A 		43.1
(3)
A 		42
(2.8)
A 		38.2
(2.1)
A 		11.3
(-3)
A 		18.8
(-1.6)
A 		32
C 14.9
(-2.9)
A 		36.6
(-1)
A 		41.5
(-0.5)
A 		81.1
(3)
A 		14.1
(-3)
A 		32
(-1.4)
A 		67
avr 33.2
(-0.3) 		39.2
(0.7) 		32
(-0.5) 		52.3
(3) 		17.8
(-3) 		23.5
(-2) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.8
(-3)
A 		17.2
(3)
A 		13
(1.3)
A 		5.5
(-1.9)
A 		14
B 4.3
(-2.4)
A 		5.2
(-1.4)
A 		3.7
(-3)
A 		9.3
(3)
A 		6
C 10.7
(-0.5)
A 		21.8
(3)
A 		3
(-3)
A 		12
(-0.1)
A 		19
avr 5.9
(-3) 		14.7
(3) 		6.6
(-2.5) 		8.9
(-1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9
(0.5)
A 		13.5
(3)
A 		2.7
(-3)
A 		9.5
(0.8)
A 		8.4
(0.2)
A 		4.8
(-1.8)
A 		11
B 12.4
(1.8)
A 		14.3
(3)
A 		10.2
(0.5)
A 		10.1
(0.4)
A 		4.6
(-3)
A 		7
(-1.5)
A 		10
C 5.5
(-2.5)
A 		11.2
(0.4)
A 		10.6
(0.1)
A 		16.3
(3)
A 		4.6
(-3)
A 		10.7
(0.1)
A 		12
avr 9
(-0.4) 		13
(3) 		7.8
(-1.4) 		12
(2.2) 		5.9
(-3) 		7.5
(-1.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13295
Sequence Type Exemplar sequence
Representative Public ID Y44A6B.1 NCBI
Target Description Y44A6B.1 /REP_DB=WormBase Gene ID /WP=CE18384 /TR=O62449 /GB=CAA16373.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075587(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075587 NCBI Caenorhabditis elegans Serpentine Receptor, class XA family member (srxa-14) (srxa-14) mRNA, complete cds. 9/11 None
GENEFINDER00000021704 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20637645:20642407:1 9/11 None
Y44A6B.1 ENSEMBL cdna:known chromosome:CEL140:V:20637645:20639100:1 gene:Y44A6B.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20637644-20639100(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srxa-14
Ensembl Y44A6B.1
Entrez Gene 189894 Entrez gene
SwissProt O62449 EMBL-EBI
WormBase CE35662 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16373 Hypothetical protein Y44A6B.1 [Caenorhabditis elegans] ref|NP_507988.2| Serpentine Receptor, class XA family member (srxa-14) [Caenorhabditis elegans] 1.0E-172
blast CAA16374 Hypothetical protein Y44A6B.2 [Caenorhabditis elegans] ref|NP_507989.2| Serpentine Receptor, class XA family member (srxa-15) [Caenorhabditis elegans] 1.0E-157
blast CAA16373 Hypothetical protein Y44A6B.1 [Caenorhabditis elegans] ref|NP_507988.2| Serpentine Receptor, class XA family member (srxa-14) [Caenorhabditis elegans] 1.0E-134
blast CAE61694 Hypothetical protein CBG05641 [Caenorhabditis briggsae] 1.0E-120
blast CAE61694 Hypothetical protein CBG05641 [Caenorhabditis briggsae] 1.0E-92
blast CAA16374 Hypothetical protein Y44A6B.2 [Caenorhabditis elegans] ref|NP_507989.2| Serpentine Receptor, class XA family member (srxa-15) [Caenorhabditis elegans] 1.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 6.3E-93
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 5.1E-93
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 2.8E-90
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507988.2 7 4-26,38-60,75-97,118-140,173-192,235-257,272-294
Y44A6B.1 7 4-26,38-60,75-97,118-140,173-192,235-257,272-294
GENEFINDER00000021704 13 4-26,38-60,75-97,118-140,180-199,239-261,271-293,306-328,343-365,386-408,438-460,501-523,538-560
Sequence
Target Sequence 
>C. ELEGANS:184123_AT
gtggcgattttctcatggatcctattgctgatcccatttttctctcactgccccgtgaat
ataaaccaacgagtttttagctttgcagtcgcatgccaagaaagacaccctgtgagactt
cttcaccagcttattacgtcactccaaaacaagtacttgattattttgccgtttacaact
atgctgttgaacgtttctctgattttttatctggcactgcagaaaagtttagttctgaga
aacgcaggcggcggaagtacagtgacatccaatgtgcctttaaacccacctcgtccaata
tttcaccgatctcgacagagacaaagttttgagaggatgcttcttttccagtcaatatct
acaacttcagttcttctcttatacgaagttagcaacttgttcatccgaattttcaatgcg
gagtacatgagtctctccgaagacatcagaaggtggatgttttatattcgagtgacgcct
actgcattgttttgtttttttatatattttgtcggcactgcttcgattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCGATTTTCTCATGGATCCTAT 567 491 391 Antisense
TTCTCTCACTGCCCCGTGAATATAA 89 693 430 Antisense
TTAGCTTTGCAGTCGCATGCCAAGA 555 679 467 Antisense
AAGACACCCTGTGAGACTTCTTCAC 423 153 492 Antisense
CCAGCTTATTACGTCACTCCAAAAC 608 261 516 Antisense
ATCCAATGTGCCTTTAAACCCACCT 561 37 657 Antisense
CCACCTCGTCCAATATTTCACCGAT 692 273 676 Antisense
GGATGCTTCTTTTCCAGTCAATATC 533 513 725 Antisense
ACAACTTCAGTTCTTCTCTTATACG 647 111 751 Antisense
ATATTCGAGTGACGCCTACTGCATT 434 19 854 Antisense
TATTTTGTCGGCACTGCTTCGATTC 207 657 895 Antisense
Sequence Source Affymetrix Proprietary Database