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[184121_at]

Description R07C3.1 /REP_DB=WormBase Gene ID /WP=CE12522 /TR=O16778 /GB=AAB66231.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 02      6grp_total > 07      4grp_total > 58      6grp_cgc > 24      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 97.6
(3)
P 		96.4
(2.5)
P 		84.4
(-3)
P 		97.1
(2.8)
A 		13
B 86.9
(0)
P 		102
(1.1)
P 		128.8
(3)
P 		44.3
(-3)
A 		85
C 67.3
(-3)
P 		102.4
(3)
P 		94.6
(1.7)
P 		76.5
(-1.4)
A 		35
avr 83.9
(-0.7) 		100.3
(2.5) 		102.6
(3) 		72.6
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 127.8
(2.9)
P 		125.6
(2.7)
P 		72.9
(-2.3)
P 		67.6
(-2.8)
A 		65.4
(-3)
P 		128.4
(3)
P 		63
B 133.6
(3)
P 		99.1
(-0.1)
P 		116.9
(1.5)
P 		94.5
(-0.5)
P 		65.8
(-3)
P 		76
(-2.1)
P 		68
C 144.1
(3)
P 		113.1
(0.2)
P 		128.5
(1.6)
P 		122.5
(1.1)
P 		77.4
(-3)
P 		81.5
(-2.6)
P 		67
avr 135.2
(3) 		112.6
(0.9) 		106.1
(0.3) 		94.9
(-0.7) 		69.5
(-3) 		95.3
(-0.6) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 35.5
(3)
P 		20.9
(-1.1)
P 		22.1
(-0.8)
P 		14.2
(-3)
A 		21
B 27.7
(2.4)
P 		25.2
(1.6)
P 		29.8
(3)
P 		9.4
(-3)
A 		20
C 22.3
(-0.2)
P 		29.4
(1.9)
P 		33
(3)
P 		12.9
(-3)
A 		20
avr 28.5
(3) 		25.2
(1.8) 		28.3
(2.9) 		12.2
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 23.6
(-1.4)
P 		44.7
(3)
P 		15.9
(-3)
P 		17.1
(-2.8)
A 		19.7
(-2.2)
P 		31.3
(0.2)
P 		29
B 46.5
(3)
P 		33
(-0.8)
P 		28.4
(-2.1)
P 		25
(-3)
P 		26.8
(-2.5)
P 		28.4
(-2.1)
P 		22
C 53.4
(3)
P 		34.5
(-0.9)
P 		32.7
(-1.3)
P 		24.6
(-3)
P 		25
(-2.9)
P 		27.3
(-2.4)
P 		29
avr 41.2
(3) 		37.4
(1.8) 		25.7
(-1.9) 		22.2
(-3) 		23.8
(-2.5) 		29
(-0.9) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5572
Sequence Type Exemplar sequence
Representative Public ID R07C3.1 NCBI
Target Description R07C3.1 /REP_DB=WormBase Gene ID /WP=CE12522 /TR=O16778 /GB=AAB66231.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061458 NCBI Caenorhabditis elegans C-type LECtin family member (clec-43) (clec-43) mRNA, complete cds. 11/11 None
R07C3.1 ENSEMBL cdna:known chromosome:CEL140:II:944072:946134:1 gene:R07C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:944070-946133(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-43
Ensembl R07C3.1
Entrez Gene 187664 Entrez gene
SwissProt O16778 EMBL-EBI
WormBase CE38627 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66231 C-type lectin protein 43 [Caenorhabditis elegans] ref|NP_493859.2| C-type LECtin family member (clec-43) [Caenorhabditis elegans] 0.0
blast T32139 hypothetical protein R07C3.1 - Caenorhabditis elegans 0.0
blast AAB66241 C-type lectin protein 44 [Caenorhabditis elegans] 1.0E-164
blast AAB66241 C-type lectin protein 44 [Caenorhabditis elegans] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.9E-7
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-10
Pfam IPR001304 EMBL-EBI C-type lectin 3.8E-6
Sequence
Target Sequence 
>C. ELEGANS:184121_AT
tgatgcccgacaagtctgccaaagagtttcaggagacttggtgtcaattcactctcaggc
tgaaaacctcttccttcagtccttggtaaattccacaggagtagcagagtataggatcgg
agcagcaactgatggagtcgggaagtattgggtcgacgggagcaccctggcaatgagtgg
gagtgtgattccaaaggggcaatggttgagcaccaactgtaataataaaattccattcat
ctgcaagcatccacagaatctgcccacgccgacaccaactgctttaggacagtgtaatgg
aactcagttcttgactggaaatggatcgttctactctcccggctaccccgatcaagcctc
cggctacccaactccatgcacctacataataactgaatctcaaggctcgatcgctcaatt
gcaattcgaagttcttcaccttttctggggtcagaatatgcagctcttctctggaatcga
tgaaactcagccatttgccatagttgacatttatagcaataagatctataactctactac
aaatgtgttaaaagtggtgttccactgcatcacaagtaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGCCCGACAAGTCTGCCAAAGA 138 567 993 Antisense
ACTCTCAGGCTGAAAACCTCTTCCT 394 99 1043 Antisense
CTCTTCCTTCAGTCCTTGGTAAATT 142 229 1060 Antisense
TGCAAGCATCCACAGAATCTGCCCA 307 577 1234 Antisense
GCCGACACCAACTGCTTTAGGACAG 169 283 1260 Antisense
TGGAAATGGATCGTTCTACTCTCCC 617 547 1308 Antisense
AACTGAATCTCAAGGCTCGATCGCT 351 141 1383 Antisense
TTCTTCACCTTTTCTGGGGTCAGAA 494 689 1424 Antisense
TATGCAGCTCTTCTCTGGAATCGAT 589 655 1449 Antisense
CGATGAAACTCAGCCATTTGCCATA 203 249 1470 Antisense
GGTGTTCCACTGCATCACAAGTAAC 694 499 1548 Antisense
Sequence Source Affymetrix Proprietary Database