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[184120_at]

Description K01A11.1 /REP_DB=WormBase Gene ID /WP=CE03449 /TR=Q21068 /GB=CAA91341.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 14      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 45.4
(-0.3)
A 		19
(-2.9)
A 		17.5
(-3)
A 		80
(3)
A 		63
B 50.5
(-1.3)
A 		38.8
(-3)
A 		52.6
(-1)
A 		80.4
(3)
A 		42
C 91.4
(3)
A 		57.6
(-1)
A 		40.7
(-3)
A 		63.7
(-0.3)
A 		51
avr 62.4
(1) 		38.5
(-2.7) 		36.9
(-3) 		74.7
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 6.2
(-3)
A 		20.5
(0.5)
A 		29.5
(2.7)
A 		9.8
(-2.1)
A 		30.9
(3)
A 		28.7
(2.5)
A 		25
B 58.1
(3)
A 		27.6
(-0.7)
A 		38.7
(0.6)
A 		37.7
(0.5)
A 		8.6
(-3)
A 		30.3
(-0.4)
A 		50
C 43.4
(1.5)
A 		56.6
(3)
A 		47.3
(1.9)
A 		10.6
(-2.3)
A 		4.4
(-3)
A 		28.2
(-0.3)
A 		52
avr 35.9
(2.3) 		34.9
(2.1) 		38.5
(3) 		19.4
(-1.8) 		14.6
(-3) 		29.1
(0.6) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 16.5
(3)
A 		4.1
(-3)
A 		4.6
(-2.8)
A 		11.7
(0.7)
A 		12
B 16.1
(2.2)
A 		9.6
(-3)
A 		12.2
(-0.9)
A 		17.1
(3)
A 		8
C 30.3
(3)
A 		16.6
(-1.2)
A 		14.2
(-1.9)
A 		10.7
(-3)
A 		20
avr 21
(3) 		10.1
(-3) 		10.3
(-2.9) 		13.2
(-1.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.2
(-3)
A 		7.3
(1.5)
A 		6.4
(0.9)
A 		2.5
(-2)
A 		9.3
(3)
A 		7
(1.3)
A 		8
B 20.2
(3)
A 		9.2
(-1)
A 		9.4
(-0.9)
A 		10
(-0.7)
A 		3.5
(-3)
A 		11.3
(-0.2)
A 		17
C 16.1
(2.5)
A 		17.3
(3)
A 		12
(1)
A 		2.1
(-2.7)
A 		1.4
(-3)
A 		9.4
(0)
A 		16
avr 12.5
(3) 		11.3
(2.1) 		9.3
(0.5) 		4.9
(-2.8) 		4.7
(-3) 		9.2
(0.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7842
Sequence Type Exemplar sequence
Representative Public ID K01A11.1 NCBI
Target Description K01A11.1 /REP_DB=WormBase Gene ID /WP=CE03449 /TR=Q21068 /GB=CAA91341.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065307 NCBI Caenorhabditis elegans K01A11.1 (K01A11.1) mRNA, complete cds. 11/11 None
SNAP00000013900 ENSEMBL cdna:SNAP chromosome:CEL140:III:3428407:3430186:-1 9/11 None
GENEFINDER00000013910 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3429507:3431335:-1 9/11 None
K01A11.1 ENSEMBL cdna:known chromosome:CEL140:III:3428407:3431338:-1 gene:K01A11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3428406-3431338(-) 95.12 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A11.1
Entrez Gene 186827 Entrez gene
SwissProt Q21068 EMBL-EBI
WormBase CE33529 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91341 Hypothetical protein K01A11.1 [Caenorhabditis elegans] ref|NP_497708.2| K01A11.1 [Caenorhabditis elegans] 3.0E-91
blast CAA91341 Hypothetical protein K01A11.1 [Caenorhabditis elegans] ref|NP_497708.2| K01A11.1 [Caenorhabditis elegans] 2.0E-81
blast CAE65030 Hypothetical protein CBG09868 [Caenorhabditis briggsae] 3.0E-70
blast CAE65030 Hypothetical protein CBG09868 [Caenorhabditis briggsae] 5.0E-65
blast CAA91341 Hypothetical protein K01A11.1 [Caenorhabditis elegans] ref|NP_497708.2| K01A11.1 [Caenorhabditis elegans] 2.0E-54
blast CAE65030 Hypothetical protein CBG09868 [Caenorhabditis briggsae] 2.0E-40
Sequence
Target Sequence 
>C. ELEGANS:184120_AT
gagcgccttcgtgatcgaattcatcgaaagaggcatcgtcatcaaaaacacaatttttct
tgcatacactaaaacaatacaccatattttacgcgcaaattcacaaaaaaacattgttca
gccatcagtaatgaacgagacagacgagctgtatgagatgtcaatggtaactcaaaaatc
cgacgacgacagtgacttggcctcgagaattcgatcggaaaaatcaataccaagtacatt
gaccactccacctacagtaacctatcatagacgtcatcatcatcatcacaaaaagaatcg
gcgagagaaaaacgaagaattatgtgaaagtcagcggaaaatagtcgaattgaatacaca
gagtcacgaatttgaccctccgtttgttgtggaagtccgttgcctaaatagtcaatcacc
gattggaagtctactgtctggtcaagaacagacgtgtttcaagggaatgttacgttgtgt
gcagcagtatgcagatgtacacgtgtctcgtcgtagtgttggttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGCCTTCGTGATCGAATTCATC 381 385 135 Antisense
GACAGTGACTTGGCCTCGAGAATTC 328 369 322 Antisense
ATACCAAGTACATTGACCACTCCAC 681 21 361 Antisense
ACTCCACCTACAGTAACCTATCATA 446 99 379 Antisense
AGAGTCACGAATTTGACCCTCCGTT 157 69 494 Antisense
TGACCCTCCGTTTGTTGTGGAAGTC 210 419 507 Antisense
GTGGAAGTCCGTTGCCTAAATAGTC 437 489 523 Antisense
ATCACCGATTGGAAGTCTACTGTCT 428 27 549 Antisense
GGAATGTTACGTTGTGTGCAGCAGT 316 533 598 Antisense
TATGCAGATGTACACGTGTCTCGTC 693 655 622 Antisense
GTGTCTCGTCGTAGTGTTGGTTCAA 307 487 637 Antisense
Sequence Source Affymetrix Proprietary Database