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[184119_at]

Description C03G6.5 /REP_DB=WormBase Gene ID /WP=CE28386 /TR=O01454 /GB=AAK72054.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 02      6grp_cgc > 46      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 36.2
(-2.9)
A 		64.6
(-1.9)
A 		32.8
(-3)
A 		202.6
(3)
P 		170
B 43.7
(-2.4)
A 		30.8
(-3)
A 		30.1
(-3)
A 		157.9
(3)
P 		128
C 19.9
(-2.8)
A 		18.5
(-2.8)
A 		12.3
(-3)
A 		197.7
(3)
P 		185
avr 33.3
(-2.7) 		38
(-2.5) 		25.1
(-3) 		186.1
(3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 33.4
(1)
A 		13.8
(-2.1)
A 		45.7
(2.9)
A 		8.2
(-3)
A 		16.2
(-1.7)
A 		46.1
(3)
A 		38
B 26.4
(-0.3)
A 		43.3
(1.9)
A 		31.5
(0.3)
A 		5.6
(-3)
A 		20.2
(-1.1)
A 		52.1
(3)
A 		47
C 18.1
(-3)
A 		44.9
(1.2)
A 		26.8
(-1.6)
A 		18.5
(-2.9)
A 		21.8
(-2.4)
A 		56
(3)
A 		38
avr 26
(-0.8) 		34
(0.4) 		34.7
(0.5) 		10.8
(-3) 		19.4
(-1.7) 		51.4
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 13.2
(-1.7)
A 		14
(-1.5)
A 		8.6
(-3)
A 		29.6
(3)
P 		21
B 13.9
(-1.4)
A 		7.6
(-2.9)
A 		7
(-3)
A 		33.6
(3)
P 		27
C 6.6
(-2.5)
A 		5.3
(-2.8)
A 		4.3
(-3)
A 		33.3
(3)
P 		29
avr 11.2
(-1.9) 		9
(-2.4) 		6.6
(-3) 		32.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.2
(-0.3)
A 		4.9
(-1.2)
A 		10
(2.2)
A 		2.1
(-3)
A 		4.9
(-1.2)
A 		11.2
(3)
A 		9
B 9.2
(-0.4)
A 		14.4
(1.3)
A 		7.6
(-1)
A 		1.5
(-3)
A 		8.2
(-0.8)
A 		19.4
(3)
A 		18
C 6.7
(-1.8)
A 		13.7
(1)
A 		6.8
(-1.8)
A 		3.7
(-3)
A 		7.1
(-1.6)
A 		18.8
(3)
A 		15
avr 7.4
(-0.9) 		11
(0.7) 		8.1
(-0.6) 		2.4
(-3) 		6.7
(-1.2) 		16.5
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12026
Sequence Type Exemplar sequence
Representative Public ID C03G6.5 NCBI
Target Description C03G6.5 /REP_DB=WormBase Gene ID /WP=CE28386 /TR=O01454 /GB=AAK72054.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072480
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000031568 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7367847:7370212:1 11/11 None
C03G6.20 ENSEMBL cdna:pseudogene chromosome:CEL140:V:7369127:7370212:1 gene:C03G6.20 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031558 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7367640-7370213(+) 100.0 100.0
Public Domain and Genome References
Ensembl C03G6.20
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T25496 hypothetical protein C03G6.5 - Caenorhabditis elegans 0.0
blast AAK72054 Hypothetical protein C03G6.5 [Caenorhabditis elegans] ref|NP_504881.1| C03G6.5 [Caenorhabditis elegans] 1.0E-106
blast NP_504869 Serpentine Receptor, class H family member (srh-187) [Caenorhabditis elegans] gb|AAG24063.1| Serpentine receptor, class h protein 187 [Caenorhabditis elegans] 2.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.4E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031568 7 211-233,246-268,288-310,331-353,388-410,430-452,465-487
Sequence
Target Sequence 
>C. ELEGANS:184119_AT
attggtcttgtttacgctggatatggttagctgctcattatattgtaatattcgttgttt
tgtgttacgtttcaactttagtcccagatcaagactatgcattgcgacaactttcaaaga
aaatatcatgctttcccgatagtttttataaaaacacatttgtggtggctgatgattcaa
gtttccacgtatgcgcatgtttcatcttttttgtagtcagttgtttcgaagtcttaacat
ttgttattttcatattttggaccttcatgcaacaacaacgatgttctcgaagaacacttc
acactcagaaaatgctcttctttgcattgattgttcaaatgggtgttccactagccatgc
ttattgtaccacttacatatgccttcatatcagttatttccttatactacaaccaaaaag
ttacttatttctttgtgatcatcggatctctgcatggtgttgtctctgcgttggtgatgc
ttttcgttcacaagccgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGTCTTGTTTACGCTGGATATG 531 3 1073 Antisense
TACGTTTCAACTTTAGTCCCAGATC 503 647 1138 Antisense
TCATGCTTTCCCGATAGTTTTTATA 471 621 1198 Antisense
GATTCAAGTTTCCACGTATGCGCAT 533 429 1246 Antisense
GTATGCGCATGTTTCATCTTTTTTG 405 455 1261 Antisense
ACTAGCCATGCTTATTGTACCACTT 121 101 1422 Antisense
TGTACCACTTACATATGCCTTCATA 523 559 1437 Antisense
ATGCCTTCATATCAGTTATTTCCTT 544 41 1451 Antisense
GATCATCGGATCTCTGCATGGTGTT 670 419 1509 Antisense
TGTTGTCTCTGCGTTGGTGATGCTT 468 563 1530 Antisense
GATGCTTTTCGTTCACAAGCCGTAT 198 413 1548 Antisense
Sequence Source Affymetrix Proprietary Database