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[184118_at]

Description T10D4.1 /REP_DB=WormBase Gene ID /WP=CE20041 /TR=Q9TZE6 /GB=AAC68715.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 68.5
(-3)
A 		85.9
(-1.8)
A 		71.5
(-2.8)
A 		152.3
(3)
A 		84
B 61.9
(-3)
A 		108.6
(3)
A 		67.8
(-2.2)
A 		91
(0.7)
A 		47
C 77.7
(-1)
A 		120.1
(2.7)
A 		54.5
(-3)
A 		123.4
(3)
A 		69
avr 69.4
(-2.5) 		104.9
(1.2) 		64.6
(-3) 		122.2
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 72.9
(1.9)
A 		81.8
(3)
A 		50.5
(-0.9)
A 		43.7
(-1.7)
A 		33.4
(-3)
A 		46.8
(-1.3)
A 		48
B 49.1
(-3)
A 		73.1
(0.9)
A 		73.5
(1)
A 		86.1
(3)
A 		76.9
(1.5)
A 		50.8
(-2.7)
A 		37
C 70.4
(0.9)
A 		88.9
(3)
A 		75.3
(1.5)
A 		56.2
(-0.7)
A 		35.6
(-3)
A 		54.6
(-0.9)
A 		53
avr 64.1
(-0.2) 		81.3
(3) 		66.4
(0.3) 		62
(-0.5) 		48.6
(-3) 		50.7
(-2.6) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 24.9
(3)
A 		18.6
(-3)
A 		18.7
(-2.9)
A 		22.3
(0.5)
A 		6
B 19.7
(-0.8)
A 		26.8
(3)
A 		15.7
(-3)
A 		19.4
(-1)
A 		11
C 25.7
(-0.4)
A 		34.5
(3)
A 		19
(-3)
A 		20.8
(-2.3)
A 		16
avr 23.4
(0.8) 		26.6
(3) 		17.8
(-3) 		20.8
(-1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 13.4
(-2)
A 		29.1
(3)
A 		11
(-2.7)
A 		11.1
(-2.7)
A 		10.1
(-3)
A 		11.4
(-2.6)
A 		19
B 17.1
(-3)
A 		24.3
(0.1)
A 		17.8
(-2.7)
A 		22.8
(-0.6)
A 		31.2
(3)
A 		18.9
(-2.2)
A 		14
C 26.1
(2.6)
A 		27.1
(3)
A 		19.2
(-0)
A 		11.3
(-3)
A 		11.5
(-2.9)
A 		18.3
(-0.3)
A 		16
avr 18.9
(-1.1) 		26.8
(3) 		16
(-2.5) 		15.1
(-3) 		17.6
(-1.7) 		16.2
(-2.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184118_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5134
Sequence Type Exemplar sequence
Representative Public ID T10D4.1 NCBI
Target Description T10D4.1 /REP_DB=WormBase Gene ID /WP=CE20041 /TR=Q9TZE6 /GB=AAC68715.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062059 NCBI Caenorhabditis elegans T10D4.1 (T10D4.1) mRNA, complete cds. 11/11 None
SNAP00000032466 ENSEMBL cdna:SNAP chromosome:CEL140:II:3151913:3152570:1 11/11 None
GENEFINDER00000032474 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3150135:3152570:1 11/11 None
T10D4.1 ENSEMBL cdna:known chromosome:CEL140:II:3150135:3152570:1 gene:T10D4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3150133-3152569(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10D4.1
Entrez Gene 188380 Entrez gene
SwissProt Q9TZE6 EMBL-EBI
WormBase CE20041 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68715 Hypothetical protein T10D4.1 [Caenorhabditis elegans] ref|NP_494460.1| T10D4.1 [Caenorhabditis elegans] 0.0
blast AAC68715 Hypothetical protein T10D4.1 [Caenorhabditis elegans] ref|NP_494460.1| T10D4.1 [Caenorhabditis elegans] 1.0E-110
blast AAG00001 Hypothetical protein R03H10.5 [Caenorhabditis elegans] ref|NP_494732.1| R03H10.5 [Caenorhabditis elegans] 5.0E-16
blast AAG00001 Hypothetical protein R03H10.5 [Caenorhabditis elegans] ref|NP_494732.1| R03H10.5 [Caenorhabditis elegans] 1.0E-15
blast AAF99999 Hypothetical protein R03H10.4 [Caenorhabditis elegans] ref|NP_494730.1| R03H10.4 [Caenorhabditis elegans] 6.0E-15
blast AAF99999 Hypothetical protein R03H10.4 [Caenorhabditis elegans] ref|NP_494730.1| R03H10.4 [Caenorhabditis elegans] 2.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 6.9E-9
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 0.012
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 8.4E-9
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 0.012
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 8.4E-9
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.4E-8
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 0.012
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 8.4E-9
Sequence
Target Sequence 
>C. ELEGANS:184118_AT
atcaagttcattattttctccgcaatccttatcggagccattctcggagcaccattggct
tctgacgatgacattgacaatgtccacgattgctccgtccgtgacaaatttttcagattg
tacagcaccgggaaaaactgcagcaaaggaatgagtcgttatcatcagtgtcatcaggac
acatcctcgactcgttgtaactactacctgaagcagtgcgatgagtacatgttctgccaa
cggaatggtgaatgcgagattgaataccaaggtggtgttaagaccagcgtttgtccagga
gtggaaatcaacgagtttgacttcaaggagtgtctcgtgaagctgctcgccaacaaagtg
agatcggaatgccttgtcagctgggatccattcatgcaaagatcaggaggtgatgtatgc
ggtgcgttcttcggaagtgcagcgtgtatgaagaaggagatcaccgagacttgtggagaa
gccgactggagaatggttcgaaaatacgtcgctcgtcgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAAGTTCATTATTTTCTCCGCAA 329 27 727 Antisense
CGCAATCCTTATCGGAGCCATTCTC 675 253 747 Antisense
GAGCCATTCTCGGAGCACCATTGGC 484 385 761 Antisense
GATTGCTCCGTCCGTGACAAATTTT 680 431 814 Antisense
GAGTCGTTATCATCAGTGTCATCAG 182 401 879 Antisense
TGTCATCAGGACACATCCTCGACTC 339 559 895 Antisense
TCCTCGACTCGTTGTAACTACTACC 200 593 910 Antisense
GTGAAGCTGCTCGCCAACAAAGTGA 235 481 1063 Antisense
GAGATCGGAATGCCTTGTCAGCTGG 685 395 1086 Antisense
TGATGTATGCGGTGCGTTCTTCGGA 404 565 1137 Antisense
TTCGAAAATACGTCGCTCGTCGCAC 349 695 1223 Antisense
Sequence Source Affymetrix Proprietary Database