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[184117_at]

Description Y12A6A.2 /REP_DB=WormBase Gene ID /WP=CE19032 /TR=Q9XXJ3 /GB=CAA19445.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_high_8_8 > 02      6grp_highest_nonorm > 80      6grp_total > 23      4grp_total > 14      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 488
1 2 3 4 range
A 491.2
(2)
P 		158.4
(-2.1)
P 		88.4
(-3)
A 		568.2
(3)
P 		480
B 358.3
(0.4)
P 		187.5
(-1.7)
A 		80.1
(-3)
A 		566.5
(3)
P 		486
C 535.5
(3)
P 		199.7
(-2.4)
A 		162.8
(-3)
P 		516.1
(2.7)
P 		373
avr 461.7
(1.8) 		181.9
(-2) 		110.4
(-3) 		550.3
(3) 		440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 279.2
(1.5)
P 		263.8
(1.1)
P 		335
(3)
P 		203.5
(-0.6)
P 		114.3
(-3)
P 		180.7
(-1.2)
P 		221
B 306
(3)
P 		301.6
(2.8)
P 		283.9
(2.1)
P 		292.5
(2.4)
P 		211.6
(-0.9)
P 		160.4
(-3)
P 		146
C 403
(3)
P 		284.3
(-0.2)
P 		207.9
(-2.2)
P 		213.6
(-2.1)
P 		200.7
(-2.4)
P 		179.4
(-3)
P 		224
avr 329.4
(3) 		283.2
(1.2) 		275.6
(0.9) 		236.5
(-0.6) 		175.5
(-2.9) 		173.5
(-3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 178.8
(3)
P 		34.4
(-2.6)
P 		23.1
(-3)
A 		83.2
(-0.7)
P 		156
B 114.3
(2.6)
P 		46.3
(-1.4)
A 		18.5
(-3)
A 		120.7
(3)
P 		102
C 177.3
(3)
P 		57.4
(-3)
A 		56.7
(-3)
P 		87
(-1.5)
P 		121
avr 156.8
(3) 		46
(-2.4) 		32.8
(-3) 		97
(0.1) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 51.5
(-1.3)
P 		93.8
(3)
P 		73
(0.9)
P 		51.6
(-1.3)
P 		34.5
(-3)
P 		44
(-2)
P 		59
B 106.5
(3)
P 		100.4
(2.2)
P 		69
(-1.8)
P 		77.5
(-0.7)
P 		86
(0.4)
P 		59.8
(-3)
P 		47
C 149.4
(3)
P 		86.7
(-0.5)
P 		52.9
(-2.4)
P 		43
(-3)
P 		64.9
(-1.8)
P 		60.1
(-2)
P 		106
avr 102.5
(3) 		93.6
(1.9) 		65
(-1.7) 		57.4
(-2.6) 		61.8
(-2.1) 		54.6
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17469
Sequence Type Exemplar sequence
Representative Public ID Y12A6A.2 NCBI
Target Description Y12A6A.2 /REP_DB=WormBase Gene ID /WP=CE19032 /TR=Q9XXJ3 /GB=CAA19445.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077880(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077880 NCBI Caenorhabditis elegans Y12A6A.2 (Y12A6A.2) mRNA, complete cds. 11/11 None
SNAP00000038633 ENSEMBL cdna:SNAP chromosome:CEL140:X:13618801:13619397:1 11/11 None
GENEFINDER00000038638 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13618801:13619397:1 11/11 None
Y12A6A.2 ENSEMBL cdna:known chromosome:CEL140:X:13618793:13619849:1 gene:Y12A6A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13618800-13619397(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y12A6A.2
Entrez Gene 181483 Entrez gene
SwissProt Q9XXJ3 EMBL-EBI
WormBase CE19032 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19445 Hypothetical protein Y12A6A.2 [Caenorhabditis elegans] ref|NP_510281.1| Y12A6A.2 [Caenorhabditis elegans] 9.0E-36
blast CAE63110 Hypothetical protein CBG07405 [Caenorhabditis briggsae] 2.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510281.1 1 7-29
Y12A6A.2 1 7-29
SNAP00000038633 1 7-29
GENEFINDER00000038638 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184117_AT
gagcagttggttgcgaacccttttcgttttcttcatcgtgctcgtcgtctcgacttcggc
actaccgtcagattatgtgcggttcctgattcaatcagccagaaatcacgaaaattctta
ttacccacaggaagaggctgggtttatgagagtcaatcggaatcagggtgctggatcagt
gagtctcgattcgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAGTTGGTTGCGAACCCTTTTC 485 367 15 Antisense
GACTTCGGCACTACCGTCAGATTAT 625 283 66 Antisense
GGCACTACCGTCAGATTATGTGCGG 134 535 72 Antisense
GATTATGTGCGGTTCCTGATTCAAT 511 429 85 Antisense
GCGGTTCCTGATTCAATCAGCCAGA 467 293 93 Antisense
AATCAGCCAGAAATCACGAAAATTC 58 171 107 Antisense
GAAAATTCTTATTACCCACAGGAAG 672 351 124 Antisense
GAGGCTGGGTTTATGAGAGTCAATC 658 405 148 Antisense
GAGTCAATCGGAATCAGGGTGCTGG 597 399 164 Antisense
AGGGTGCTGGATCAGTGAGTCTCGA 86 59 179 Antisense
TGGATCAGTGAGTCTCGATTCGCTG 316 551 186 Antisense
Sequence Source Affymetrix Proprietary Database