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[184115_at]

Description T09F5.10 /REP_DB=WormBase Gene ID /WP=CE13539 /TR=O62374 /GB=CAB05803.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 20      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 1.9
(-3)
A 		18.7
(3)
A 		6.8
(-1.3)
A 		7.8
(-0.9)
A 		17
B 9.6
(3)
A 		3.7
(-2.4)
A 		3.1
(-3)
A 		3.7
(-2.4)
A 		7
C 18.2
(-1.1)
A 		4.1
(-2.8)
A 		2.1
(-3)
A 		52.7
(3)
A 		51
avr 9.9
(-1) 		8.8
(-1.3) 		4
(-3) 		21.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 7.8
(-2.7)
A 		2.1
(-3)
A 		47.1
(-0.8)
A 		4.6
(-2.9)
A 		38
(-1.3)
A 		127.1
(3)
P 		125
B 1.4
(-3)
A 		2.8
(-2.9)
A 		2.6
(-2.9)
A 		2
(-3)
A 		65.6
(1.8)
A 		81.1
(3)
P 		80
C 2.2
(-3)
A 		20.7
(-1.7)
A 		2.5
(-3)
A 		31.9
(-0.9)
A 		34.3
(-0.8)
A 		88.6
(3)
P 		86
avr 3.8
(-3) 		8.5
(-2.7) 		17.4
(-2.1) 		12.8
(-2.4) 		46
(-0.3) 		98.9
(3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-3)
A 		4.1
(3)
A 		1.8
(-1.1)
A 		1.1
(-2.3)
A 		3
B 3.1
(3)
A 		0.9
(-2.5)
A 		0.7
(-3)
A 		0.8
(-2.8)
A 		2
C 6
(0.9)
A 		1.2
(-2.6)
A 		0.7
(-3)
A 		8.9
(3)
A 		8
avr 3.3
(2.3) 		2.1
(-0.6) 		1.1
(-3) 		3.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 1.4
(-2.9)
A 		0.8
(-3)
A 		10.3
(-1.1)
A 		1.2
(-2.9)
A 		11.5
(-0.9)
A 		30.9
(3)
P 		30
B 0.5
(-3)
A 		0.9
(-2.9)
A 		0.6
(-3)
A 		0.5
(-3)
A 		26.6
(2.3)
A 		30.2
(3)
P 		30
C 0.8
(-3)
A 		6.3
(-1.8)
A 		0.6
(-3)
A 		6.4
(-1.8)
A 		11.1
(-0.8)
A 		29.7
(3)
P 		29
avr 0.9
(-3) 		2.7
(-2.6) 		3.8
(-2.4) 		2.7
(-2.6) 		16.4
(0.2) 		30.3
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184115_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13060
Sequence Type Exemplar sequence
Representative Public ID T09F5.10 NCBI
Target Description T09F5.10 /REP_DB=WormBase Gene ID /WP=CE13539 /TR=O62374 /GB=CAB05803.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074344 NCBI Caenorhabditis elegans T09F5.10 (T09F5.10) mRNA, complete cds. 11/11 None
SNAP00000036445 ENSEMBL cdna:SNAP chromosome:CEL140:V:15183721:15184371:1 11/11 None
GENEFINDER00000036451 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15182743:15184365:1 11/11 None
T09F5.10 ENSEMBL cdna:known chromosome:CEL140:V:15182761:15184371:1 gene:T09F5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15182760-15184371(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09F5.10
Entrez Gene 188348 Entrez gene
SwissProt O62374 EMBL-EBI
WormBase CE13539 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05803 Hypothetical protein T09F5.10 [Caenorhabditis elegans] ref|NP_506745.1| T09F5.10 [Caenorhabditis elegans] 0.0
blast CAB04320 Hypothetical protein F36D3.8 [Caenorhabditis elegans] ref|NP_507184.1| F36D3.8 [Caenorhabditis elegans] 1.0E-165
blast CAB04320 Hypothetical protein F36D3.8 [Caenorhabditis elegans] ref|NP_507184.1| F36D3.8 [Caenorhabditis elegans] 1.0E-163
blast CAB05803 Hypothetical protein T09F5.10 [Caenorhabditis elegans] ref|NP_506745.1| T09F5.10 [Caenorhabditis elegans] 1.0E-117
blast CAE72442 Hypothetical protein CBG19612 [Caenorhabditis briggsae] 1.0E-103
blast CAE72442 Hypothetical protein CBG19612 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 2.4E-107
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 1.4E-31
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 2.4E-107
Sequence
Target Sequence 
>C. ELEGANS:184115_AT
gggtcacaaggcggtcaatgttacctacataagcaccttcaactccaaagacataattat
tcccgaagatttggatttcagtgggattactgtaacggatgctagagaggtacccaagag
ggatataatcaactacggtcaaaccatttatccgtatcatcgagaaatttttattatttc
ccacatgtatgataaagatggtttcgggaaagttgcgtacgatgagtatgggaatgtgat
tggaattagccaacttattgtttatggaaccaaaaaagacagtaatcttggtccaattta
tgcagacaatccacgtgttgctcaggcaatgtttgcgtcgatgctcaaggatattaaggc
ttcttgcacggaaattgctcattatgagatgcgatcgtcacaacaaagccaagattgttt
ccgatggatcgctccattcctgaagtgcaagccaagtcgcgttcacatccacaacctttt
gtataagcacgaggtcccagagggtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTCACAAGGCGGTCAATGTTACC 397 497 429 Antisense
ATGTTACCTACATAAGCACCTTCAA 635 45 446 Antisense
AAGCACCTTCAACTCCAAAGACATA 583 151 459 Antisense
AACGGATGCTAGAGAGGTACCCAAG 295 1 522 Antisense
GTCAAACCATTTATCCGTATCATCG 415 463 566 Antisense
ATTTTTATTATTTCCCACATGTATG 426 15 595 Antisense
GGCAATGTTTGCGTCGATGCTCAAG 527 533 753 Antisense
GGCTTCTTGCACGGAAATTGCTCAT 119 537 786 Antisense
GATGCGATCGTCACAACAAAGCCAA 200 415 816 Antisense
CGTTCACATCCACAACCTTTTGTAT 395 245 888 Antisense
ATAAGCACGAGGTCCCAGAGGGTAT 388 25 911 Antisense
Sequence Source Affymetrix Proprietary Database