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[184113_at] 7TM chemoreceptor, sre family

Description C12D5.8 /REP_DB=WormBase Gene ID /WP=CE27680 /TR=Q17928 /GB=AAA98572.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 10      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 13.5
(-2.8)
A 		47.2
(-1.4)
A 		9.4
(-3)
A 		154.8
(3)
P 		145
B 18.8
(-3)
A 		53.7
(-0.3)
A 		30.3
(-2.1)
A 		95
(3)
P 		76
C 27
(-2.7)
A 		22.6
(-3)
A 		24.5
(-2.9)
A 		127.6
(3)
P 		105
avr 19.8
(-3) 		41.2
(-1.8) 		21.4
(-2.9) 		125.8
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 8
(-3)
A 		12
(-2.5)
A 		58.6
(3)
A 		54.3
(2.5)
A 		22.3
(-1.3)
A 		31.1
(-0.3)
A 		51
B 2.2
(-3)
A 		49.1
(1)
A 		72.1
(3)
P 		54.9
(1.5)
A 		21.2
(-1.4)
A 		17.6
(-1.7)
A 		70
C 23.9
(-1.3)
A 		65.3
(3)
A 		26.1
(-1.1)
A 		41.3
(0.5)
A 		7.5
(-3)
A 		20
(-1.7)
A 		58
avr 11.4
(-3) 		42.1
(1.5) 		52.3
(3) 		50.2
(2.7) 		17
(-2.2) 		22.9
(-1.3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 4.9
(-2.3)
A 		10.3
(-0.7)
A 		2.5
(-3)
A 		22.7
(3)
P 		20
B 6
(-3)
A 		13.3
(0.1)
A 		7
(-2.6)
A 		20.2
(3)
P 		14
C 8.9
(-2)
A 		6.5
(-3)
A 		8.5
(-2.2)
A 		21.5
(3)
P 		15
avr 6.6
(-2.8) 		10
(-1.5) 		6
(-3) 		21.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.5
(-3)
A 		4.3
(-1.6)
A 		12.8
(2.5)
A 		13.8
(3)
A 		6.7
(-0.5)
A 		7.6
(-0)
A 		12
B 0.8
(-3)
A 		16.3
(2.6)
A 		17.5
(3)
P 		14.5
(1.9)
A 		8.6
(-0.2)
A 		6.6
(-0.9)
A 		17
C 8.9
(-0.8)
A 		19.9
(3)
A 		6.7
(-1.5)
A 		8.3
(-1)
A 		2.4
(-3)
A 		6.7
(-1.5)
A 		18
avr 3.7
(-3) 		13.5
(3) 		12.3
(2.3) 		12.2
(2.2) 		5.9
(-1.7) 		7
(-1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12042
Sequence Type Exemplar sequence
Representative Public ID C12D5.8 NCBI
Target Description C12D5.8 /REP_DB=WormBase Gene ID /WP=CE27680 /TR=Q17928 /GB=AAA98572.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182415 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-11) (sre-11) mRNA, complete cds. 11/11 None
SNAP00000021442 ENSEMBL cdna:SNAP chromosome:CEL140:V:7684501:7685738:-1 10/11 None
GENEFINDER00000021457 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7684501:7686295:-1 11/11 None
C12D5.11 ENSEMBL cdna:known chromosome:CEL140:V:7684501:7686364:-1 gene:C12D5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7684501-7688279(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-11
Ensembl C12D5.11
Entrez Gene 353444 Entrez gene
SwissProt Q8I7M5 EMBL-EBI
WormBase CE38147 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84867 Serpentine receptor, class e (epsilon) protein 11 [Caenorhabditis elegans] ref|NP_872215.2| Serpentine Receptor, class E (epsilon) family member (sre-11) [Caenorhabditis elegans] 1.0E-179
blast AAN84867 Serpentine receptor, class e (epsilon) protein 11 [Caenorhabditis elegans] ref|NP_872215.2| Serpentine Receptor, class E (epsilon) family member (sre-11) [Caenorhabditis elegans] 1.0E-134
blast T30067 hypothetical protein C12D5.8 - Caenorhabditis elegans 1.0E-125
blast T30067 hypothetical protein C12D5.8 - Caenorhabditis elegans 1.0E-118
blast T30067 hypothetical protein C12D5.8 - Caenorhabditis elegans 3.0E-96
blast CAE71982 Hypothetical protein CBG19057 [Caenorhabditis briggsae] 4.0E-88
blast T30067 hypothetical protein C12D5.8 - Caenorhabditis elegans 1.0E-85
blast AAN84867 Serpentine receptor, class e (epsilon) protein 11 [Caenorhabditis elegans] ref|NP_872215.2| Serpentine Receptor, class E (epsilon) family member (sre-11) [Caenorhabditis elegans] 1.0E-81
blast CAE71982 Hypothetical protein CBG19057 [Caenorhabditis briggsae] 7.0E-73
blast AAN84867 Serpentine receptor, class e (epsilon) protein 11 [Caenorhabditis elegans] ref|NP_872215.2| Serpentine Receptor, class E (epsilon) family member (sre-11) [Caenorhabditis elegans] 5.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 7.7E-14
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 5.1E-9
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.7E-45
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.2E-16
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.8E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872215.2 7 26-48,55-77,97-119,140-159,164-186,222-244,259-281
C12D5.11 5 7-29,51-73,93-112,122-144,157-179
SNAP00000021442 4 7-29,39-59,66-88,114-136
GENEFINDER00000021457 5 28-50,71-90,95-117,153-175,190-212
Sequence
Target Sequence 
>C. ELEGANS:184113_AT
gatcttcactgcctcaatgaatgtctcaattttcacaatggcatctgcaatgtgcatttt
accatgcatgattattgaacggtgttttgccacgtattttgtggaaaactatgagaaaaa
gccaagaaagtacatttcaatttctttgattttccttcttatcacatttggaacaatttc
ctgttattttctccgtaacgcttcaaatacaatatacgtgatgctcaacctgataatttt
ttacatgggattcatgaatgtagtgcttgtgctcagtgtgatgttatcaggattgaagga
aataactccggagcaacaagctatttgtagtgttgcgcttaacactgccatttttgttta
tagctttttgctatcacatattatttcctactgctgtgaaaaatggaaacgtcatttatc
agccacgtggagaaagattggcttcaactctgccactgttcaagttgcaccactttgcga
tacatttggctccgaaatgaatgtgaatgtgaccgtggagacttatttcgataacctcaa
aactacatggaatgtgccaacgacttctgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTCACTGCCTCAATGAATGTC 71 421 1146 Antisense
GAACGGTGTTTTGCCACGTATTTTG 47 195 1222 Antisense
CTGTTATTTTCTCCGTAACGCTTCA 416 237 1326 Antisense
GTAGTGCTTGTGCTCAGTGTGATGT 171 457 1405 Antisense
TTGCGCTTAACACTGCCATTTTTGT 248 701 1478 Antisense
GCTATCACATATTATTTCCTACTGC 22 305 1515 Antisense
AAGATTGGCTTCAACTCTGCCACTG 140 157 1579 Antisense
TCTGCCACTGTTCAAGTTGCACCAC 433 609 1594 Antisense
ACTTTGCGATACATTTGGCTCCGAA 448 101 1617 Antisense
GTGACCGTGGAGACTTATTTCGATA 644 481 1654 Antisense
ATGGAATGTGCCAACGACTTCTGCG 361 53 1692 Antisense
Sequence Source Affymetrix Proprietary Database