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[184108_s_at]

Description ZK1225.4 /REP_DB=WormBase Gene ID /WP=CE19343 /TR=Q9XXL5 /GB=CAA18371.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 0.8
(-3)
A 		1.5
(-2.8)
A 		15.5
(0.9)
A 		23.2
(3)
A 		22
B 1.1
(-3)
A 		12.9
(3)
A 		4.4
(-1.3)
A 		1.4
(-2.8)
A 		12
C 0.7
(-3)
A 		2.9
(3)
A 		1.7
(-0.3)
A 		1.3
(-1.4)
A 		2
avr 0.9
(-3) 		5.8
(0.8) 		7.2
(1.9) 		8.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 1.3
(-2.4)
A 		0.8
(-3)
A 		4.6
(1.8)
A 		1.4
(-2.3)
A 		5
(2.3)
A 		5.6
(3)
A 		5
B 3.9
(-2.5)
A 		1.2
(-3)
A 		4.4
(-2.5)
A 		1
(-3)
A 		10.8
(-1.4)
A 		38.4
(3)
A 		37
C 4
(-2.7)
A 		17.5
(-0.3)
A 		2
(-3)
A 		3
(-2.8)
A 		8.9
(-1.8)
A 		36.8
(3)
A 		35
avr 3.1
(-2.7) 		6.5
(-1.9) 		3.7
(-2.5) 		1.8
(-3) 		8.2
(-1.5) 		26.9
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.3
(-3)
A 		0.3
(-3)
A 		4.1
(3)
A 		3.4
(1.9)
A 		4
B 0.4
(-2.8)
A 		3.2
(3)
A 		1
(-1.6)
A 		0.3
(-3)
A 		3
C 0.2
(-3)
A 		0.8
(3)
A 		0.6
(1)
A 		0.2
(-3)
A 		1
avr 0.3
(-3) 		1.4
(1.1) 		1.9
(3) 		1.3
(0.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.3
(-2.5)
A 		1
(0.7)
A 		0.4
(-2.1)
A 		1.5
(3)
A 		1.4
(2.5)
A 		1
B 1.4
(-2.5)
A 		0.4
(-3)
A 		1.1
(-2.7)
A 		0.3
(-3)
A 		4.4
(-1.2)
A 		14.3
(3)
A 		14
C 1.5
(-2.5)
A 		5.3
(-0.6)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		2.9
(-1.8)
A 		12.3
(3)
A 		12
avr 1
(-2.6) 		2
(-1.9) 		0.9
(-2.7) 		0.4
(-3) 		2.9
(-1.3) 		9.3
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184108_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.855
Sequence Type Exemplar sequence
Representative Public ID ZK1225.4 NCBI
Target Description ZK1225.4 /REP_DB=WormBase Gene ID /WP=CE19343 /TR=Q9XXL5 /GB=CAA18371.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060915 NCBI Caenorhabditis elegans ZK1225.4 (ZK1225.4) mRNA, complete cds. 11/11 None
GENEFINDER00000029398 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13218704:13227206:-1 9/11 None
SNAP00000029391 ENSEMBL cdna:SNAP chromosome:CEL140:I:13222229:13224325:-1 11/11 None
ZK1225.4 ENSEMBL cdna:known chromosome:CEL140:I:13222229:13224325:-1 gene:ZK1225.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13222159-13224256(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1225.4
Entrez Gene 173185 Entrez gene
SwissProt Q9XXL5 EMBL-EBI
WormBase CE19343 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18371 Hypothetical protein ZK1225.4 [Caenorhabditis elegans] ref|NP_493316.1| ZK1225.4 [Caenorhabditis elegans] 0.0
blast CAA18376 Hypothetical protein ZK1225.5 [Caenorhabditis elegans] ref|NP_493317.1| ZK1225.5 [Caenorhabditis elegans] 0.0
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast CAA18376 Hypothetical protein ZK1225.5 [Caenorhabditis elegans] ref|NP_493317.1| ZK1225.5 [Caenorhabditis elegans] 1.0E-175
blast NP_001023366 T08B6.9 [Caenorhabditis elegans] gb|AAO91700.1| Hypothetical protein T08B6.9 [Caenorhabditis elegans] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Sequence
Target Sequence 
>C. ELEGANS:184108_S_AT
gatgtgtccaacaattgcagttccagaggctgacttgatgaagaagcacgcattagttta
tcgggagattattggatcgagacttcaactgatggttaacaatccagagttgtggtacaa
tttcgccgaagctattgtagcgctgacaagtcctacatatgaggttgaaaattgcgctgg
aaagggagaggagatggaaaaggggacggatatgtaccagctcaagcacacattctggaa
gttgaacaaggatacacacggacgaatggaaggatacaccttagggaagaagaatgatat
ttcagagactggagagaagatgtgggcacgtataagaatcatttggacacctggaaatga
caaacttgtgtatgattcgagatggacgttttatttggaatggaatagtgatttgcaagc
atttaccatctataaaatgattcttcagtgcccaacagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTGTCCAACAATTGCAGTTCCA 179 407 1044 Antisense
GCAGTTCCAGAGGCTGACTTGATGA 574 311 1060 Antisense
AGCACGCATTAGTTTATCGGGAGAT 237 77 1088 Antisense
GGATCGAGACTTCAACTGATGGTTA 260 513 1117 Antisense
GTTGTGGTACAATTTCGCCGAAGCT 497 437 1152 Antisense
TCGCCGAAGCTATTGTAGCGCTGAC 77 599 1166 Antisense
TAGCGCTGACAAGTCCTACATATGA 246 651 1181 Antisense
GCTCAAGCACACATTCTGGAAGTTG 23 303 1263 Antisense
GAACAAGGATACACACGGACGAATG 376 353 1287 Antisense
GATTTGCAAGCATTTACCATCTATA 312 427 1453 Antisense
AATGATTCTTCAGTGCCCAACAGTT 581 163 1479 Antisense
Sequence Source Affymetrix Proprietary Database