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[184107_at]

Description K09D9.1 /REP_DB=WormBase Gene ID /WP=CE21055 /TR=Q9N5I0 /GB=AAF39922.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 17      6grp_total > 17      4grp_total > 39      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 103.4
(3)
P 		56.7
(-1.3)
A 		45.8
(-2.3)
A 		38.1
(-3)
A 		65
B 111.6
(3)
P 		85.1
(1.4)
A 		9.5
(-3)
A 		42.5
(-1.1)
A 		102
C 132.6
(3)
P 		29.3
(-3)
A 		81.8
(0)
A 		94.4
(0.8)
P 		103
avr 115.9
(3) 		57
(-2) 		45.7
(-3) 		58.3
(-1.9) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 601
1 2 3 4 5 6 range
A 632.8
(3)
P 		207.5
(-1.7)
P 		163.3
(-2.2)
P 		132.8
(-2.5)
P 		88.2
(-3)
P 		149.8
(-2.3)
P 		545
B 630.2
(3)
P 		224.2
(-1.5)
P 		125.3
(-2.6)
P 		165.2
(-2.2)
P 		92.1
(-3)
P 		142.9
(-2.4)
P 		538
C 678.3
(3)
P 		286.3
(-0.9)
P 		159.9
(-2.2)
P 		103.8
(-2.7)
P 		77.4
(-3)
A 		177.4
(-2)
P 		601
avr 647.1
(3) 		239.3
(-1.4) 		149.5
(-2.3) 		133.9
(-2.5) 		85.9
(-3) 		156.7
(-2.2) 		561
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 37.6
(3)
P 		12.3
(-1.7)
A 		12
(-1.8)
A 		5.6
(-3)
A 		32
B 35.6
(3)
P 		21
(0.4)
A 		2.2
(-3)
A 		9
(-1.8)
A 		33
C 43.9
(3)
P 		8.4
(-3)
A 		28.5
(0.4)
A 		15.9
(-1.7)
P 		36
avr 39
(3) 		13.9
(-2.2) 		14.2
(-2.2) 		10.2
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 116.6
(3)
P 		73.8
(0.1)
P 		35.6
(-2.4)
P 		33.7
(-2.5)
P 		26.6
(-3)
P 		36.5
(-2.3)
P 		90
B 219.3
(3)
P 		74.6
(-1.6)
P 		30.4
(-3)
P 		43.7
(-2.6)
P 		37.4
(-2.8)
P 		53.3
(-2.3)
P 		189
C 251.4
(3)
P 		87.4
(-1.3)
P 		40.7
(-2.5)
P 		20.9
(-3)
P 		25
(-2.9)
A 		59.4
(-2)
P 		231
avr 195.8
(3) 		78.6
(-1.2) 		35.6
(-2.8) 		32.8
(-2.9) 		29.7
(-3) 		49.7
(-2.3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184107_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15076
Sequence Type Exemplar sequence
Representative Public ID K09D9.1 NCBI
Target Description K09D9.1 /REP_DB=WormBase Gene ID /WP=CE21055 /TR=Q9N5I0 /GB=AAF39922.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071721(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071721 NCBI Caenorhabditis elegans K09D9.1 (K09D9.1) mRNA, complete cds. 11/11 None
SNAP00000015710 ENSEMBL cdna:SNAP chromosome:CEL140:V:4024917:4025954:1 11/11 None
GENEFINDER00000015718 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4024917:4025954:1 11/11 None
K09D9.1 ENSEMBL cdna:known chromosome:CEL140:V:4024917:4026017:1 gene:K09D9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4024916-4026017(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09D9.1
Entrez Gene 187208 Entrez gene
SwissProt Q9N5I0 EMBL-EBI
WormBase CE21055 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39922 Hypothetical protein K09D9.1 [Caenorhabditis elegans] ref|NP_504122.1| K09D9.1 [Caenorhabditis elegans] 1.0E-163
blast AAF39922 Hypothetical protein K09D9.1 [Caenorhabditis elegans] ref|NP_504122.1| K09D9.1 [Caenorhabditis elegans] 1.0E-157
blast CAE58290 Hypothetical protein CBG01397 [Caenorhabditis briggsae] 9.0E-66
blast CAE58290 Hypothetical protein CBG01397 [Caenorhabditis briggsae] 1.0E-63
blast AAK18901 Hypothetical protein C49G7.7 [Caenorhabditis elegans] ref|NP_504125.1| C49G7.7 [Caenorhabditis elegans] 6.0E-36
Sequence
Target Sequence 
>C. ELEGANS:184107_AT
aatcgattttcgaggtgccccattttttacggggctccgtttcccagacaactactttga
aaagtttcgaattcaaaaaatgcataaaatactcgatgacaaatattatcagtgcacggc
tgtagattctgttcatggacagaaatttaatgatatccaatttaaaaatcgatctctgaa
taaatcaaaggatctagaagccgaaacaatgacatctaaaattgcgggaagacctattgt
agcatatcatctgataaagcctcatcaaatttacgagaaaaaagttgcaaagtattttaa
tccatgctcaaccaagaagaaaaattggtattactccgagctctactcagttgattggta
tcaacttatcactgaggatacctacgaagctatcacttatgatgctcttgaagatcatga
atgggatgagcttcatgagtgggaagaagaagaagatacaggttctattagtgtggcggt
ttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGATTTTCGAGGTGCCCCATTT 555 163 339 Antisense
TCCGTTTCCCAGACAACTACTTTGA 311 593 374 Antisense
AGTGCACGGCTGTAGATTCTGTTCA 588 59 449 Antisense
GACCTATTGTAGCATATCATCTGAT 614 383 569 Antisense
AGTATTTTAATCCATGCTCAACCAA 393 61 629 Antisense
TGGTATTACTCCGAGCTCTACTCAG 593 549 664 Antisense
GAGCTCTACTCAGTTGATTGGTATC 5 389 676 Antisense
GATTGGTATCAACTTATCACTGAGG 191 435 691 Antisense
GAGGATACCTACGAAGCTATCACTT 125 403 712 Antisense
GAAGCTATCACTTATGATGCTCTTG 131 343 724 Antisense
GGTTCTATTAGTGTGGCGGTTTCTG 486 503 799 Antisense
Sequence Source Affymetrix Proprietary Database