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[184106_at]

Description M03F8.1 /REP_DB=WormBase Gene ID /WP=CE12372 /TR=O16378 /GB=AAB65908.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 57      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 464
1 2 3 4 range
A 25
(-2.9)
A 		215.4
(-0.4)
P 		470.7
(3)
P 		18.9
(-3)
A 		452
B 52.1
(-2.3)
A 		355.8
(2.1)
P 		415.2
(3)
P 		6.3
(-3)
A 		409
C 85.5
(-2.8)
A 		409.4
(3)
P 		391.7
(2.7)
P 		72.7
(-3)
A 		337
avr 54.2
(-2.7) 		326.9
(1.5) 		425.9
(3) 		32.6
(-3) 		393

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 174.2
(-3)
A 		463.1
(3)
P 		377.5
(1.2)
P 		356.7
(0.8)
P 		362.8
(0.9)
P 		270.9
(-1)
P 		289
B 144.1
(-3)
A 		446.6
(3)
P 		249.4
(-0.9)
P 		421.7
(2.5)
P 		315.6
(0.4)
P 		258.7
(-0.7)
P 		303
C 116.4
(-3)
A 		453.3
(3)
P 		394.4
(2)
P 		348.1
(1.1)
P 		303.1
(0.3)
P 		263.2
(-0.4)
P 		337
avr 144.9
(-3) 		454.3
(3) 		340.4
(0.8) 		375.5
(1.5) 		327.2
(0.5) 		264.3
(-0.7) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 9.1
(-2.7)
A 		46.7
(-0.8)
P 		123.1
(3)
P 		2.8
(-3)
A 		120
B 16.6
(-2)
A 		87.9
(2.5)
P 		96.2
(3)
P 		1.3
(-3)
A 		95
C 28.3
(-2.2)
A 		117.7
(2.1)
P 		136.5
(3)
P 		12.3
(-3)
A 		124
avr 18
(-2.3) 		84.1
(1.2) 		118.6
(3) 		5.5
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 32.1
(-3)
A 		164.7
(3)
P 		82.2
(-0.7)
P 		90.5
(-0.4)
P 		109.5
(0.5)
P 		66
(-1.5)
P 		133
B 50.1
(-3)
A 		148.7
(3)
P 		60.6
(-2.4)
P 		111.7
(0.7)
P 		128.2
(1.8)
P 		96.5
(-0.2)
P 		99
C 43.1
(-3)
A 		138.3
(3)
P 		100.4
(0.6)
P 		70
(-1.3)
P 		98.1
(0.5)
P 		88.1
(-0.2)
P 		95
avr 41.8
(-3) 		150.6
(3) 		81.1
(-0.8) 		90.7
(-0.3) 		111.9
(0.9) 		83.5
(-0.7) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12311
Sequence Type Exemplar sequence
Representative Public ID M03F8.1 NCBI
Target Description M03F8.1 /REP_DB=WormBase Gene ID /WP=CE12372 /TR=O16378 /GB=AAB65908.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072148(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072148 NCBI Caenorhabditis elegans M03F8.1 (M03F8.1) mRNA, complete cds. 11/11 None
SNAP00000043840 ENSEMBL cdna:SNAP chromosome:CEL140:V:5954029:5956360:1 11/11 None
GENEFINDER00000043852 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5954029:5956360:1 11/11 None
M03F8.1 ENSEMBL cdna:known chromosome:CEL140:V:5954029:5956360:1 gene:M03F8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5954028-5956360(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03F8.1
Entrez Gene 187429 Entrez gene
SwissProt O16378 EMBL-EBI
WormBase CE12372 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504549 M03F8.1 [Caenorhabditis elegans] gb|AAB65908.1| Hypothetical protein M03F8.1 [Caenorhabditis elegans] 0.0
blast NP_504549 M03F8.1 [Caenorhabditis elegans] gb|AAB65908.1| Hypothetical protein M03F8.1 [Caenorhabditis elegans] 1.0E-163
blast CAE64538 Hypothetical protein CBG09281 [Caenorhabditis briggsae] 1.0E-129
blast CAE64538 Hypothetical protein CBG09281 [Caenorhabditis briggsae] 1.0E-105
blast CAE61955 Hypothetical protein CBG05954 [Caenorhabditis briggsae] 8.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504549.1 6 36-58,157-179,186-208,218-239,246-268,283-305
M03F8.1 6 36-58,157-179,186-208,218-239,246-268,283-305
SNAP00000043840 6 36-58,110-132,139-161,171-192,199-221,236-258
GENEFINDER00000043852 6 36-58,157-179,186-208,218-239,246-268,283-305
Sequence
Target Sequence 
>C. ELEGANS:184106_AT
aacatcgatataccgagcttcccagctgtacgctagtgtccagactggattccgatatgg
attattattcgtgtttcttccaatggttctcaactcatttatcctcgccaaaacactagt
tattgaaaacaaaaccttcacatcattaatgataggaaccctatatttctgcaatgaagt
tgcaatgcatatttcatatttttgtgtcacgacgttgcatgtggaattcgaagggagtta
tattccatacagcagcgtctacttctcaattgcaatgattctgtcaatgtcgaagttgat
gctgagaaattttacagagccaatcggattaacaaccatactacgaagtgttgggcttct
gattatcataattgcacatgacccactggcagccaacgtccaagattttgtggatcacgt
atactgcgatacatttgtttctccaaaagtatgcttcctcgaacttgcctgcattggtat
cttattccttaataatctttacgacgtaaatcaaactcaaaatctacatcttgtagtctc
acagactgccgacgaccaaagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATCGATATACCGAGCTTCCCAG 142 135 426 Antisense
CCAGCTGTACGCTAGTGTCCAGACT 510 273 447 Antisense
TTCGTGTTTCTTCCAATGGTTCTCA 330 695 493 Antisense
ATGGTTCTCAACTCATTTATCCTCG 195 51 508 Antisense
ATTCCATACAGCAGCGTCTACTTCT 169 7 667 Antisense
TAATTGCACATGACCCACTGGCAGC 196 633 794 Antisense
CACTGGCAGCCAACGTCCAAGATTT 555 197 809 Antisense
TACTGCGATACATTTGTTTCTCCAA 309 647 847 Antisense
GTTTCTCCAAAAGTATGCTTCCTCG 157 451 862 Antisense
TTCCTCGAACTTGCCTGCATTGGTA 682 695 880 Antisense
CACAGACTGCCGACGACCAAAGCAT 478 195 965 Antisense
Sequence Source Affymetrix Proprietary Database