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[184105_at]

Description Y68A4B.2 /REP_DB=WormBase Gene ID /WP=CE19262 /TR=Q9XXB7 /GB=CAA19555.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 5.6
(-2.1)
A 		5.2
(-2.2)
A 		19.7
(3)
A 		3.1
(-3)
A 		17
B 9.7
(3)
A 		2.1
(-3)
A 		4.7
(-0.9)
A 		7.4
(1.2)
A 		8
C 4.1
(-2.8)
A 		3.8
(-2.8)
A 		2.7
(-3)
A 		45.8
(3)
A 		43
avr 6.5
(-1.9) 		3.7
(-3) 		9
(-0.9) 		18.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 2.2
(-3)
A 		2.9
(-1.9)
A 		4
(-0.1)
A 		3.4
(-1.1)
A 		5.9
(3)
A 		2.9
(-1.9)
A 		4
B 3.1
(-1.3)
A 		5.8
(3)
A 		2.5
(-2.2)
A 		2.2
(-2.7)
A 		2
(-3)
A 		2.5
(-2.2)
A 		4
C 3
(-2.7)
A 		3.8
(-2.5)
A 		6.9
(-2)
A 		36.6
(3)
A 		1.1
(-3)
A 		2
(-2.8)
A 		36
avr 2.8
(-2.8) 		4.2
(-2.1) 		4.5
(-2) 		14.1
(3) 		3
(-2.7) 		2.5
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2
(-1)
A 		1.1
(-2.2)
A 		5.1
(3)
A 		0.5
(-3)
A 		5
B 3.1
(3)
A 		0.5
(-3)
A 		1.1
(-1.6)
A 		1.6
(-0.5)
A 		3
C 1.3
(-2.7)
A 		1.1
(-2.9)
A 		1
(-3)
A 		7.7
(3)
A 		7
avr 2.1
(0) 		0.9
(-3) 		2.4
(0.8) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1
(-0.4)
A 		0.9
(-0.9)
A 		0.9
(-0.9)
A 		1.8
(3)
A 		0.7
(-1.7)
A 		1
B 1.1
(-0.7)
A 		1.9
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.8
(-2.1)
A 		0.9
(-1.6)
A 		1
C 1.1
(-2.4)
A 		1.2
(-2.3)
A 		1.7
(-1.9)
A 		7.4
(3)
A 		0.4
(-3)
A 		0.7
(-2.7)
A 		7
avr 0.9
(-2.7) 		1.4
(-1.4) 		1.1
(-2.2) 		3
(3) 		1
(-2.5) 		0.8
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184105_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14086
Sequence Type Exemplar sequence
Representative Public ID Y68A4B.2 NCBI
Target Description Y68A4B.2 /REP_DB=WormBase Gene ID /WP=CE19262 /TR=Q9XXB7 /GB=CAA19555.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074968 NCBI Caenorhabditis elegans Y68A4B.2 (Y68A4B.2) mRNA, complete cds. 11/11 None
GENEFINDER00000008405 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17246266:17250906:-1 10/11 None
Y68A4B.2 ENSEMBL cdna:known chromosome:CEL140:V:17246344:17248083:-1 gene:Y68A4B.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008402 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17246343-17248083(-) 98.42 100.0
Public Domain and Genome References
Gene Title
Ensembl Y68A4B.2
Entrez Gene 190531 Entrez gene
SwissProt Q9XXB7 EMBL-EBI
WormBase CE19262 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19555 Hypothetical protein Y68A4B.2 [Caenorhabditis elegans] ref|NP_507369.1| Y68A4B.2 [Caenorhabditis elegans] 1.0E-112
blast CAA19555 Hypothetical protein Y68A4B.2 [Caenorhabditis elegans] ref|NP_507369.1| Y68A4B.2 [Caenorhabditis elegans] 5.0E-94
blast CAA19554 Hypothetical protein Y68A4B.1 [Caenorhabditis elegans] ref|NP_507370.1| Y68A4B.1 [Caenorhabditis elegans] 2.0E-80
blast CAB04132 Hypothetical protein F16H6.2 [Caenorhabditis elegans] emb|CAB03936.1| Hypothetical protein F16H6.2 [Caenorhabditis elegans] ref|NP_507556.1| F16H6.2 [Caenorhabditis elegans] 3.0E-41
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 5.0E-38
blast CAA93877 Hypothetical protein T27D12.3 [Caenorhabditis elegans] ref|NP_496528.1| T27D12.3 [Caenorhabditis elegans] 1.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008405 1 340-362
Sequence
Target Sequence 
>C. ELEGANS:184105_AT
tctcttgttcatttttcctgttgtcaattcatgtatccctactcaacaagtggaaattcc
gtgcccaactggctgggcacaatctgacgaaagacctagtggaccatggtgcatcaaggc
atttcgtgatttcggtataactcagtacgatgcgcaagccgcttgtggtgctcagggagc
agtcctcagcggaattcaaaatcaagtcgagatgcaaatgatggctggattggcaatgac
gggtggtcattggcttggcgctagaagaacggccgcatgtattgggcagctagtgaccgc
gacatgcacccgactgaactcatttgaatggacagacggctctgcgaccggcaccgatgg
atttaattggagactttcagacggagagccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTTGTTCATTTTTCCTGTTGTC 45 613 18 Antisense
CCAACTGGCTGGGCACAATCTGACG 260 277 82 Antisense
GCATTTCGTGATTTCGGTATAACTC 192 307 136 Antisense
TAACTCAGTACGATGCGCAAGCCGC 276 639 155 Antisense
GATGCGCAAGCCGCTTGTGGTGCTC 314 415 166 Antisense
TGTGGTGCTCAGGGAGCAGTCCTCA 472 555 181 Antisense
TGGTCATTGGCTTGGCGCTAGAAGA 186 551 261 Antisense
GAACGGCCGCATGTATTGGGCAGCT 309 349 284 Antisense
TATTGGGCAGCTAGTGACCGCGACA 262 665 297 Antisense
ATGCACCCGACTGAACTCATTTGAA 328 43 321 Antisense
GGAGACTTTCAGACGGAGAGCCAAA 584 519 386 Antisense
Sequence Source Affymetrix Proprietary Database