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[184104_at]

Description F15A4.10 /REP_DB=WormBase Gene ID /WP=CE15847 /TR=O17811 /GB=CAB02940.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 65.5
(-1.2)
A 		50
(-3)
A 		76.3
(0.1)
A 		100.6
(3)
P 		51
B 70.5
(-3)
A 		80.5
(0.9)
P 		86
(3)
M 		84
(2.2)
A 		16
C 84.2
(-0.1)
P 		112.6
(3)
A 		58.2
(-3)
A 		83.9
(-0.2)
A 		54
avr 73.4
(-3) 		81
(-0.2) 		73.5
(-3) 		89.5
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 65
(-0.1)
A 		78
(3)
A 		67.1
(0.4)
P 		52.5
(-3)
A 		53.6
(-2.7)
P 		68.2
(0.7)
P 		26
B 42.3
(-3)
A 		48.1
(-2.3)
A 		47.7
(-2.4)
A 		55.8
(-1.4)
A 		48.9
(-2.2)
P 		93.8
(3)
P 		52
C 81.8
(0)
P 		79
(-1.6)
A 		76.6
(-3)
A 		86.9
(3)
A 		84.1
(1.4)
A 		84.9
(1.8)
P 		10
avr 63
(-2.8) 		68.4
(-1.1) 		63.8
(-2.5) 		65.1
(-2.1) 		62.2
(-3) 		82.3
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 23.8
(3)
A 		10.9
(-3)
A 		19.9
(1.2)
A 		14.7
(-1.2)
P 		13
B 22.5
(3)
A 		19.9
(-0.4)
P 		19.9
(-0.4)
M 		17.9
(-3)
A 		5
C 27.9
(1.5)
P 		32.4
(3)
A 		20.3
(-1)
A 		14.1
(-3)
A 		18
avr 24.7
(3) 		21.1
(0.6) 		20
(-0.1) 		15.6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 12
(-3)
A 		27.7
(3)
A 		14.6
(-2)
P 		13.3
(-2.5)
A 		16.2
(-1.4)
P 		16.6
(-1.2)
P 		16
B 14.7
(-2.2)
A 		16
(-1.9)
A 		11.6
(-3)
A 		14.8
(-2.2)
A 		19.8
(-0.9)
P 		35
(3)
P 		23
C 30.3
(3)
P 		24.1
(0.1)
A 		19.5
(-2.1)
A 		17.5
(-3)
A 		27.2
(1.5)
A 		28.4
(2.1)
P 		13
avr 19
(-1) 		22.6
(0.9) 		15.2
(-3) 		15.2
(-3) 		21.1
(0.1) 		26.7
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184104_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3360
Sequence Type Exemplar sequence
Representative Public ID F15A4.10 NCBI
Target Description F15A4.10 /REP_DB=WormBase Gene ID /WP=CE15847 /TR=O17811 /GB=CAB02940.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064262 NCBI Caenorhabditis elegans F15A4.10 (F15A4.10) mRNA, complete cds. 11/11 None
SNAP00000042554 ENSEMBL cdna:SNAP chromosome:CEL140:II:12484554:12485030:-1 11/11 None
GENEFINDER00000042556 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12484554:12485030:-1 11/11 None
F15A4.10 ENSEMBL cdna:known chromosome:CEL140:II:12484443:12485099:-1 gene:F15A4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12484550-12485027(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15A4.10
Entrez Gene 174889 Entrez gene
SwissProt O17811 EMBL-EBI
WormBase CE15847 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02940 Hypothetical protein F15A4.10 [Caenorhabditis elegans] ref|NP_496663.3| F15A4.10 [Caenorhabditis elegans] gb|AAG50228.1| 2M776 [Caenorhabditis elegans] sp|O17811|YSZI_CAEEL Hypothetical protein F15A4.10 in chromosome II 3.0E-38
Sequence
Target Sequence 
>C. ELEGANS:184104_AT
tgtccgcccaactgcagaagatcatcgccgacaactcggagctcattcaggagaagagca
agaagagcgaccaggatgagctcggcaagcgaattgatgcgctgctctgggaggtggaca
ctcttcagaagaacattgccgagactaaggaaatgtgtcggcgttggggagacgagcgga
agagagaagccgccgaattcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCGCCCAACTGCAGAAGATCAT 625 557 14 Antisense
GCAGAAGATCATCGCCGACAACTCG 324 313 27 Antisense
GCCGACAACTCGGAGCTCATTCAGG 232 285 40 Antisense
AGCGACCAGGATGAGCTCGGCAAGC 508 75 79 Antisense
GAGCTCGGCAAGCGAATTGATGCGC 616 387 91 Antisense
TTGATGCGCTGCTCTGGGAGGTGGA 496 699 107 Antisense
GCTCTGGGAGGTGGACACTCTTCAG 489 299 117 Antisense
CTTCAGAAGAACATTGCCGAGACTA 661 221 136 Antisense
ACTAAGGAAATGTGTCGGCGTTGGG 518 1 157 Antisense
GTCGGCGTTGGGGAGACGAGCGGAA 155 471 170 Antisense
GGAAGAGAGAAGCCGCCGAATTCGC 235 531 191 Antisense
Sequence Source Affymetrix Proprietary Database