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[184103_s_at]

Description W09B7.2 /REP_DB=WormBase Gene ID /WP=CE21282 /TR=Q9N5A6 /GB=AAF60391.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 20      6grp_total > 86      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 53.9
(-2.8)
A 		99.7
(-0.6)
P 		49.3
(-3)
P 		177.7
(3)
P 		128
B 89
(0.3)
P 		53.6
(-1.3)
A 		13.6
(-3)
A 		152.4
(3)
P 		139
C 48.1
(-2.8)
A 		70.3
(-1.9)
A 		44
(-3)
P 		192.7
(3)
P 		149
avr 63.7
(-1.8) 		74.5
(-1.3) 		35.6
(-3) 		174.3
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 50.8
(-1.8)
A 		28.1
(-3)
A 		51.9
(-1.7)
A 		60.3
(-1.2)
A 		91.9
(0.5)
P 		137.1
(3)
P 		109
B 45.2
(-2.5)
A 		56.8
(-1.9)
A 		37.2
(-3)
A 		62.8
(-1.5)
P 		70.3
(-1.1)
P 		141.2
(3)
P 		104
C 34.2
(-3)
A 		40.2
(-2.4)
A 		62.3
(-0.3)
A 		78.3
(1.2)
M 		74.2
(0.8)
A 		97.8
(3)
P 		64
avr 43.4
(-2.9) 		41.7
(-3) 		50.5
(-2.4) 		67.1
(-1.2) 		78.8
(-0.3) 		125.4
(3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 19.6
(0.1)
A 		21.7
(1)
P 		12.9
(-3)
P 		26
(3)
P 		13
B 28.4
(2.2)
P 		13.2
(-0.9)
A 		3.1
(-3)
A 		32.5
(3)
P 		29
C 15.9
(-2.8)
A 		20.2
(-1.3)
A 		15.3
(-3)
P 		32.5
(3)
P 		17
avr 21.3
(0.3) 		18.4
(-0.6) 		10.4
(-3) 		30.3
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 9.4
(-3)
A 		10
(-2.9)
A 		11.3
(-2.5)
A 		15.3
(-1.5)
A 		27.7
(1.6)
P 		33.4
(3)
P 		24
B 15.7
(-2.1)
A 		18.9
(-1.6)
A 		9
(-3)
A 		16.6
(-2)
P 		28.6
(-0.3)
P 		52.7
(3)
P 		44
C 12.7
(-2.9)
A 		12.3
(-3)
A 		15.8
(-2)
A 		15.7
(-2)
M 		24
(0.4)
A 		32.7
(3)
P 		20
avr 12.6
(-2.9) 		13.7
(-2.6) 		12
(-3) 		15.9
(-2.2) 		26.8
(0.2) 		39.6
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184103_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11411
Sequence Type Exemplar sequence
Representative Public ID W09B7.2 NCBI
Target Description W09B7.2 /REP_DB=WormBase Gene ID /WP=CE21282 /TR=Q9N5A6 /GB=AAF60391.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072883(11), NM_072869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072883 NCBI Caenorhabditis elegans F07B7.2 (F07B7.2) mRNA, complete cds. 11/11 None
NM_072869 NCBI Caenorhabditis elegans W09B7.2 (W09B7.2) mRNA, complete cds. 11/11 None
SNAP00000015101 ENSEMBL cdna:SNAP chromosome:CEL140:V:8873421:8874590:1 11/11 None
GENEFINDER00000015149 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8873421:8874590:1 11/11 None
SNAP00000023232 ENSEMBL cdna:SNAP chromosome:CEL140:V:8831327:8832496:1 11/11 None
GENEFINDER00000023236 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8831327:8832496:1 11/11 None
W09B7.2 ENSEMBL cdna:known chromosome:CEL140:V:8830752:8832496:1 gene:W09B7.2 11/11 None
F07B7.2 ENSEMBL cdna:known chromosome:CEL140:V:8872846:8874590:1 gene:F07B7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8873421-8874591(+) 36.28 93.38
chrV:8831327-8832497(+) 36.28 93.38
Public Domain and Genome References
Gene Title

Ensembl W09B7.2
F07B7.2
Entrez Gene 179263 Entrez gene
189307 Entrez gene
SwissProt Q9N5A6 EMBL-EBI
WormBase CE21282 Wormbase
CE21282 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60391 Hypothetical protein W09B7.2 [Caenorhabditis elegans] gb|AAK84511.1| Hypothetical protein F07B7.2 [Caenorhabditis elegans] ref|NP_505270.1| W09B7.2 [Caenorhabditis elegans] ref|NP_505284.1| F07B7.2 [Caenorhabditis elegans] 0.0
blast AAF60391 Hypothetical protein W09B7.2 [Caenorhabditis elegans] gb|AAK84511.1| Hypothetical protein F07B7.2 [Caenorhabditis elegans] ref|NP_505270.1| W09B7.2 [Caenorhabditis elegans] ref|NP_505284.1| F07B7.2 [Caenorhabditis elegans] 1.0E-170
blast AAB65999 Hypothetical protein C03A7.2 [Caenorhabditis elegans] ref|NP_504390.1| C03A7.2 [Caenorhabditis elegans] 5.0E-60
Sequence
Target Sequence 
>C. ELEGANS:184103_S_AT
tctccctcgagaacatcatcaaccgctgtacccggaacacctgcttctctgtgactgtcc
acgcttttggaatcttcgacgcgtctggtctaggccaagccaggctggtcgcggaggccc
aaaccgcgaatggtaaagaggtggcgatctttgtaaaagacacaccgaagtactactcgc
gcgctggcttcgcgaagatccatagcgacgacaacgcggagaaccatcgtgcttcagcac
ttcgacaaggagtcatggaatgggcaagaggacacgacaactggtatgagcactacgcag
attggatggattatcatccgaaccaaatcccgctcacatgtccatgcatcagtacccgta
cgtcaccaaccgctctacatgatcgccgcgaacaatgcattatccgaaaacttgcacaac
tctccacgatcgtcttgatcgacggaacacgagtggtcccgtttgagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCCTCGAGAACATCATCAACCG 220 611 464 Antisense
GACTGTCCACGCTTTTGGAATCTTC 606 375 516 Antisense
AGACACACCGAAGTACTACTCGCGC 637 71 621 Antisense
GCTGGCTTCGCGAAGATCCATAGCG 693 293 646 Antisense
GAACCATCGTGCTTCAGCACTTCGA 47 347 684 Antisense
GATTATCATCCGAACCAAATCCCGC 106 431 772 Antisense
TCCATGCATCAGTACCCGTACGTCA 682 589 804 Antisense
GATCGCCGCGAACAATGCATTATCC 341 417 844 Antisense
TCCGAAAACTTGCACAACTCTCCAC 553 595 866 Antisense
AACTCTCCACGATCGTCTTGATCGA 144 141 881 Antisense
GAACACGAGTGGTCCCGTTTGAGGA 447 351 908 Antisense
Sequence Source Affymetrix Proprietary Database