[Home] | [Total List]

[184102_s_at]

Description ZK1025.8 /REP_DB=WormBase Gene ID /WP=CE19329 /TR=Q9XTN8 /GB=CAA18362.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      4grp_high_8_8 > 46      6grp_total > 11      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5182
1 2 3 4 range
A 60.5
(-3)
M 		4560.6
(3)
P 		4395.2
(2.8)
P 		108.4
(-2.9)
P 		4500
B 71.3
(-3)
P 		5082.1
(2.8)
P 		5242.4
(3)
P 		66.4
(-3)
A 		5176
C 109.1
(-3)
P 		5061.2
(3)
P 		4622.3
(2.5)
P 		147
(-3)
P 		4952
avr 80.3
(-3) 		4901.3
(3) 		4753.3
(2.8) 		107.3
(-3) 		4821

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 746
1 2 3 4 5 6 range
A 296.5
(-1)
P 		790.3
(3)
P 		433.5
(0.1)
P 		138.1
(-2.3)
P 		76.9
(-2.8)
M 		51.6
(-3)
A 		739
B 251.8
(-1)
P 		664.5
(3)
P 		394.1
(0.4)
P 		89.5
(-2.6)
P 		46.6
(-3)
P 		55.1
(-2.9)
A 		618
C 315.8
(-0.4)
P 		667.2
(3)
P 		447
(0.9)
P 		64.3
(-2.8)
P 		44.1
(-3)
P 		57.2
(-2.9)
P 		623
avr 288
(-0.9) 		707.3
(3) 		424.9
(0.4) 		97.3
(-2.6) 		55.9
(-3) 		54.6
(-3) 		653
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1597
1 2 3 4 range
A 22
(-3)
M 		990
(2.2)
P 		1149
(3)
P 		15.9
(-3)
P 		1133
B 22.7
(-3)
P 		1255.2
(3)
P 		1214.8
(2.8)
P 		14.2
(-3)
A 		1241
C 36.1
(-3)
P 		1455.1
(2.4)
P 		1611
(3)
P 		24.8
(-3)
P 		1586
avr 26.9
(-3) 		1233.4
(2.6) 		1324.9
(3) 		18.3
(-3) 		1307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 54.7
(-2.1)
P 		281.1
(3)
P 		94.4
(-1.2)
P 		35
(-2.5)
P 		23.2
(-2.8)
M 		12.6
(-3)
A 		269
B 87.6
(-1)
P 		221.2
(3)
P 		95.7
(-0.7)
P 		23.7
(-2.9)
P 		18.9
(-3)
P 		20.5
(-3)
A 		202
C 117
(0.3)
P 		203.6
(3)
P 		113.8
(0.2)
P 		12.9
(-3)
P 		14.3
(-3)
P 		19.1
(-2.8)
P 		191
avr 86.4
(-1.1) 		235.3
(3) 		101.3
(-0.7) 		23.9
(-2.8) 		18.8
(-3) 		17.4
(-3) 		218
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184102_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1817
Sequence Type Exemplar sequence
Representative Public ID ZK1025.8 NCBI
Target Description ZK1025.8 /REP_DB=WormBase Gene ID /WP=CE19329 /TR=Q9XTN8 /GB=CAA18362.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060523(11), NM_060529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060523 NCBI Caenorhabditis elegans ZK1025.2 (ZK1025.2) mRNA, complete cds. 11/11 None
NM_060529 NCBI Caenorhabditis elegans ZK1025.8 (ZK1025.8) mRNA, complete cds. 11/11 None
SNAP00000038816 ENSEMBL cdna:SNAP chromosome:CEL140:I:11457978:11461395:-1 11/11 None
GENEFINDER00000038827 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11457978:11459860:-1 11/11 None
SNAP00000038821 ENSEMBL cdna:SNAP chromosome:CEL140:I:11476283:11479706:1 11/11 None
GENEFINDER00000038825 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11477818:11479706:1 11/11 None
ZK1025.2 ENSEMBL cdna:known chromosome:CEL140:I:11457978:11460094:-1 gene:ZK1025.2 11/11 None
ZK1025.8 ENSEMBL cdna:known chromosome:CEL140:I:11477584:11479706:1 gene:ZK1025.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11477514-11479637(+) 100.0 100.0
chrI:11457908-11460025(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl ZK1025.2
ZK1025.8
Entrez Gene 173030 Entrez gene
173032 Entrez gene
WormBase CE19329 Wormbase
CE19329 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18366 Hypothetical protein ZK1025.8 [Caenorhabditis elegans] emb|CAA18362.1| Hypothetical protein ZK1025.2 [Caenorhabditis elegans] ref|NP_492930.1| ZK1025.8 [Caenorhabditis elegans] ref|NP_492924.1| ZK1025.2 [Caenorhabditis elegans] 1.0E-164
blast CAA18366 Hypothetical protein ZK1025.8 [Caenorhabditis elegans] emb|CAA18362.1| Hypothetical protein ZK1025.2 [Caenorhabditis elegans] ref|NP_492930.1| ZK1025.8 [Caenorhabditis elegans] ref|NP_492924.1| ZK1025.2 [Caenorhabditis elegans] 1.0E-140
blast CAA18366 Hypothetical protein ZK1025.8 [Caenorhabditis elegans] emb|CAA18362.1| Hypothetical protein ZK1025.2 [Caenorhabditis elegans] ref|NP_492930.1| ZK1025.8 [Caenorhabditis elegans] ref|NP_492924.1| ZK1025.2 [Caenorhabditis elegans] 1.0E-135
blast AAC17803 Hypothetical protein T24A6.16 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:184102_S_AT
tttgtgactccatccgattcattgaagaacgataaggacgcagtgcgatttgtgttcgtg
cgggatccgtttcgccgttttgtgtcgatgtacttgaacaaatgtgtcgttgaaaaacgg
tgtttcgactgtgaaaccgatatgcggtgtatcgcgaagaaaacctacgagtcattcgtc
gagattcagaataatgagactaaagctgcgggaattgagtatgttgaggcacatgctgct
ccaacgacttggaactgtaaattcaacgagggagttgagaactgggagctgctgcctatg
gactcggacctcaaagatcggatttcgtcggctgctaaattagcagatatcttaagaaag
caaggcgtccgtgacactttagttgagcaaatttataaagacattttgactaccgagact
gctcactctactcacaaatggaccaaacgtctggaagctgaaaagcaagttcgagaagat
ccgattgttcgtgaatacctgcacaaaatctacctctacgattatcttcttttcccgttt
gacagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTGACTCCATCCGATTCATTGA 380 665 307 Antisense
GACGCAGTGCGATTTGTGTTCGTGC 155 381 343 Antisense
GTTTCGCCGTTTTGTGTCGATGTAC 221 451 375 Antisense
GTTGAGAACTGGGAGCTGCTGCCTA 322 437 580 Antisense
TGCCTATGGACTCGGACCTCAAAGA 415 583 599 Antisense
TCAAAGATCGGATTTCGTCGGCTGC 361 629 617 Antisense
GCAAGGCGTCCGTGACACTTTAGTT 483 321 666 Antisense
TGCTCACTCTACTCACAAATGGACC 296 581 726 Antisense
GAATACCTGCACAAAATCTACCTCT 214 327 799 Antisense
ATCTACCTCTACGATTATCTTCTTT 290 31 814 Antisense
TATCTTCTTTTCCCGTTTGACAGAA 315 659 829 Antisense
Sequence Source Affymetrix Proprietary Database