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[184101_at] 7TM chemoreceptor, srx family

Description C03G6.2 /REP_DB=WormBase Gene ID /WP=CE07876 /TR=O01457 /GB=AAB52302.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 12      6grp_cgc > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 155.7
(-0.5)
P 		118.5
(-1.6)
A 		70.4
(-3)
A 		273.6
(3)
P 		203
B 188
(-0.1)
P 		118.1
(-1.8)
A 		66.4
(-3)
A 		320.2
(3)
P 		254
C 168.2
(-0.9)
P 		81.1
(-2.6)
A 		61.9
(-3)
A 		360.9
(3)
P 		299
avr 170.6
(-0.5) 		105.9
(-2.1) 		66.2
(-3) 		318.2
(3) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 140.4
(3)
P 		75.5
(-2.5)
A 		77.2
(-2.3)
P 		69.5
(-3)
A 		112.5
(0.6)
A 		72
(-2.8)
A 		71
B 114.3
(1.2)
P 		118.1
(1.8)
P 		125.5
(3)
M 		96.2
(-1.8)
M 		89.1
(-3)
P 		99
(-1.4)
P 		36
C 136.3
(3)
P 		108.4
(1.1)
P 		46.3
(-3)
A 		126
(2.3)
A 		81.7
(-0.6)
A 		106.9
(1)
P 		90
avr 130.3
(3) 		100.7
(-0.8) 		83
(-3) 		97.2
(-1.2) 		94.4
(-1.6) 		92.6
(-1.8) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 56.7
(3)
P 		25.7
(-1.9)
A 		18.4
(-3)
A 		40.1
(0.4)
P 		38
B 60
(2.1)
P 		29.2
(-1.4)
A 		15.4
(-3)
A 		68.2
(3)
P 		53
C 55.7
(2.2)
P 		23.3
(-2.7)
A 		21.6
(-3)
A 		60.9
(3)
P 		39
avr 57.5
(3) 		26.1
(-1.8) 		18.5
(-3) 		56.4
(2.8) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 25.9
(0.2)
P 		26.8
(0.5)
A 		16.8
(-3)
P 		17.6
(-2.7)
A 		34
(3)
A 		17.5
(-2.8)
A 		17
B 39.8
(3)
P 		39.3
(2.8)
P 		30.5
(-0.9)
M 		25.5
(-3)
M 		36.2
(1.5)
P 		36.9
(1.8)
P 		14
C 50.5
(3)
P 		33.1
(0.3)
P 		11.8
(-3)
A 		25.3
(-0.9)
A 		26.4
(-0.7)
A 		35.8
(0.7)
P 		39
avr 38.7
(3) 		33.1
(1.2) 		19.7
(-3) 		22.8
(-2) 		32.2
(0.9) 		30.1
(0.3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184101_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12387
Sequence Type Exemplar sequence
Representative Public ID C03G6.2 NCBI
Target Description C03G6.2 /REP_DB=WormBase Gene ID /WP=CE07876 /TR=O01457 /GB=AAB52302.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072484(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072484 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-56) (srx-56) mRNA, complete cds. 9/11 None
GENEFINDER00000031564 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7376993:7378187:1 9/11 None
C03G6.2 ENSEMBL cdna:known chromosome:CEL140:V:7376993:7378187:1 gene:C03G6.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031560 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7376993-7378363(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-56
Ensembl C03G6.2
Entrez Gene 182168 Entrez gene
SwissProt O01457 EMBL-EBI
WormBase CE38030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52302 Serpentine receptor, class x protein 56 [Caenorhabditis elegans] ref|NP_504885.2| Serpentine Receptor, class X family member (srx-56) [Caenorhabditis elegans] 1.0E-163
blast AAB94253 Serpentine receptor, class x protein 68 [Caenorhabditis elegans] ref|NP_504082.1| Serpentine Receptor, class X family member (srx-68) [Caenorhabditis elegans] 1.0E-107
blast CAE57775 Hypothetical protein CBG00797 [Caenorhabditis briggsae] 6.0E-94
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504885.2 6 7-29,82-104,125-147,176-195,216-238,248-270
C03G6.2 6 7-29,82-104,125-147,176-195,216-238,248-270
GENEFINDER00000031564 6 7-29,82-104,125-147,176-195,216-238,248-270
Sequence
Target Sequence 
>C. ELEGANS:184101_AT
atcccgtttttttgtattcactgcgacagagttttgtggtgtcattgcatggtatggtga
ctttttgaagaatgcagctattgtaattgcaactgtttctttggatatcataaccgtttt
gagagtccgtcatattactaaaaagataagtggagcaatgagtgaagaagcccagaataa
catttccgcccgtgatattcgatttttgaaacaagctgttgctcaagccactgtgtttct
ctgtgaactcaccacttactttttctttccactttattttgagaattactggatattgtt
ctttggtacttcttttgcatggattttcgcaaaactgaaaatttcagaattattgtggtc
gtttgccatcccgaagttcgaagtttccttttgggcaagaaagtcagtcaagtacattca
gtgtctatccgaacaactacagctaaataaatattttcttcatgacccacctcttttccg
cctaacctgtgatttttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCGTTTTTTTGTATTCACTGCG 632 37 462 Antisense
AACCGTTTTGAGAGTCCGTCATATT 128 145 573 Antisense
GAAGCCCAGAATAACATTTCCGCCC 80 345 628 Antisense
ATTTCCGCCCGTGATATTCGATTTT 140 17 643 Antisense
ACAAGCTGTTGCTCAAGCCACTGTG 583 111 672 Antisense
AGCCACTGTGTTTCTCTGTGAACTC 165 85 687 Antisense
GTTCTTTGGTACTTCTTTTGCATGG 601 441 759 Antisense
CGTTTGCCATCCCGAAGTTCGAAGT 578 247 821 Antisense
GTGTCTATCCGAACAACTACAGCTA 437 485 882 Antisense
TAAATATTTTCTTCATGACCCACCT 316 641 909 Antisense
TTCCGCCTAACCTGTGATTTTTCAA 224 695 937 Antisense
Sequence Source Affymetrix Proprietary Database