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[184100_at]

Description C46F9.4 /REP_DB=WormBase Gene ID /WP=CE08771 /TR=O17189 /GB=AAB70959.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 40.5
(-0.1)
A 		23.3
(-3)
A 		36.1
(-0.9)
A 		59.4
(3)
A 		36
B 39.7
(1.8)
A 		31.3
(-3)
A 		41.7
(3)
A 		34.1
(-1.4)
A 		10
C 23.3
(-3)
A 		47
(0.8)
P 		32.5
(-1.5)
A 		61
(3)
A 		38
avr 34.5
(-2.8) 		33.9
(-3) 		36.8
(-2) 		51.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 20.9
(-3)
A 		43.4
(0.7)
A 		57.4
(3)
M 		29.3
(-1.6)
A 		27.5
(-1.9)
A 		39.4
(0)
A 		37
B 29.7
(2.7)
A 		30.7
(3)
A 		18.2
(-0.9)
A 		11.5
(-3)
A 		29.8
(2.7)
A 		13.3
(-2.4)
A 		19
C 13.6
(0)
A 		21.8
(2.5)
A 		16.3
(0.8)
A 		7.1
(-1.9)
A 		23.6
(3)
A 		3.3
(-3)
A 		20
avr 21.4
(-1) 		32
(3) 		30.6
(2.5) 		16
(-3) 		27
(1.1) 		18.7
(-2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 14.7
(3)
A 		5.1
(-3)
A 		9.4
(-0.3)
A 		8.7
(-0.8)
A 		10
B 12.7
(3)
A 		7.7
(-2.6)
A 		9.7
(-0.3)
A 		7.3
(-3)
A 		5
C 7.7
(-3)
A 		13.5
(3)
P 		11.3
(0.7)
A 		10.3
(-0.3)
A 		6
avr 11.7
(3) 		8.8
(-3) 		10.1
(-0.3) 		8.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.8
(-3)
A 		15.4
(3)
A 		12.5
(1.5)
M 		7.4
(-1.1)
A 		8.3
(-0.7)
A 		9.6
(-0)
A 		12
B 10.3
(1.8)
A 		10.2
(1.7)
A 		4.4
(-2.1)
A 		3
(-3)
A 		12.1
(3)
A 		5
(-1.7)
A 		9
C 5
(0.6)
A 		6.7
(2.2)
A 		4.2
(-0.1)
A 		1.4
(-2.7)
A 		7.6
(3)
A 		1.1
(-3)
A 		7
avr 6.4
(-0.8) 		10.8
(3) 		7
(-0.3) 		3.9
(-3) 		9.3
(1.7) 		5.2
(-1.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5907
Sequence Type Exemplar sequence
Representative Public ID C46F9.4 NCBI
Target Description C46F9.4 /REP_DB=WormBase Gene ID /WP=CE08771 /TR=O17189 /GB=AAB70959.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061714(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061714 NCBI Caenorhabditis elegans C46F9.4 (C46F9.4) mRNA, complete cds. 11/11 None
SNAP00000005796 ENSEMBL cdna:SNAP chromosome:CEL140:II:1896064:1897760:1 11/11 None
GENEFINDER00000005803 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1896064:1897760:1 9/11 None
C46F9.4 ENSEMBL cdna:known chromosome:CEL140:II:1896064:1897760:1 gene:C46F9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1895578-1897759(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46F9.4
Entrez Gene 183516 Entrez gene
SwissProt O17189 EMBL-EBI
WormBase CE36800 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70959 Hypothetical protein C46F9.4 [Caenorhabditis elegans] ref|NP_494115.2| C46F9.4 [Caenorhabditis elegans] 0.0
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 1.0E-169
blast AAB70958 Hypothetical protein C46F9.3 [Caenorhabditis elegans] ref|NP_494116.1| C46F9.3 [Caenorhabditis elegans] 1.0E-166
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 1.0E-165
blast AAB70958 Hypothetical protein C46F9.3 [Caenorhabditis elegans] ref|NP_494116.1| C46F9.3 [Caenorhabditis elegans] 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 8.2E-41
Pfam IPR002083 EMBL-EBI MATH 1.2E-27
Pfam IPR002083 EMBL-EBI MATH 3.1E-42
Pfam IPR002083 EMBL-EBI MATH 3.1E-42
Sequence
Target Sequence 
>C. ELEGANS:184100_AT
gacagcatttgtttggaagctcatgtattagtgatcaatgtcacaggtggtctgataatt
tactgttcgaattataataaatatcgattatttgaagataagccacgcgatattgcacat
gcagaaaaaacatttgtactatccgacactgtcaaaaacatgtcaagaattaaagaagga
tggttttacaatacgaaaattcaaaatcgtttcaacattccatggagacttcaaattcaa
agacgagatggattcgttggtctgtgtctttattgtttgaaactactagatgaatccaga
aaatggtcaattgaaattgaatttcaattgaaaatagtttcaaccaatggaagacgttta
ttgtgtagaggaacatatgtgattgaaaacccaatctcttaccaatgtcttatgatcatc
agatgggacagtttggagaaaaaatacatagtaaataacactctcaccctcgaagctcac
gtcgaaattctgaatatgactggaattgatgatgaaaatatttttcagaagccttctgga
ttcacaattcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGCATTTGTTTGGAAGCTCATG 34 369 856 Antisense
GTGATCAATGTCACAGGTGGTCTGA 683 483 886 Antisense
GGTGGTCTGATAATTTACTGTTCGA 521 499 901 Antisense
TAAGCCACGCGATATTGCACATGCA 240 637 954 Antisense
ACATTTGTACTATCCGACACTGTCA 260 105 985 Antisense
GAGATGGATTCGTTGGTCTGTGTCT 452 395 1100 Antisense
CGTTGGTCTGTGTCTTTATTGTTTG 387 247 1110 Antisense
AAAACCCAATCTCTTACCAATGTCT 395 131 1241 Antisense
ACCAATGTCTTATGATCATCAGATG 200 85 1256 Antisense
TAGTAAATAACACTCTCACCCTCGA 574 651 1304 Antisense
GAAGCCTTCTGGATTCACAATTCCT 222 345 1383 Antisense
Sequence Source Affymetrix Proprietary Database