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[184099_at]

Description C24H11.8 /REP_DB=WormBase Gene ID /WP=CE19702 /TR=Q9XVD1 /GB=CAB03914.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 37      6grp_total > 21      4grp_total > 44      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 54.5
(0.5)
P 		87.3
(3)
P 		16
(-2.4)
A 		8.6
(-3)
A 		79
B 30.5
(-2.8)
P 		83.6
(3)
A 		37.1
(-2.1)
A 		29
(-3)
A 		55
C 81.3
(-0.4)
P 		108.5
(3)
P 		61.1
(-3)
P 		77.6
(-0.9)
P 		47
avr 55.4
(-1.1) 		93.1
(3) 		38.1
(-3) 		38.4
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 25.3
(0)
A 		48.2
(3)
M 		46.4
(2.8)
A 		42.4
(2.3)
A 		1.8
(-3)
A 		3.4
(-2.8)
A 		46
B 43.9
(1.1)
A 		48.7
(2.2)
P 		52.6
(3)
P 		33.4
(-1.2)
A 		37.4
(-0.3)
A 		25
(-3)
A 		28
C 42.5
(-0.5)
A 		83.7
(3)
P 		54.7
(0.6)
A 		40
(-0.7)
A 		24.5
(-2)
P 		12.1
(-3)
A 		72
avr 37.2
(0) 		60.2
(3) 		51.2
(1.8) 		38.6
(0.2) 		21.2
(-2) 		13.5
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 19.8
(3)
P 		18.9
(2.7)
P 		4.2
(-2.1)
A 		1.3
(-3)
A 		19
B 9.7
(-1.5)
P 		20.6
(3)
A 		8.6
(-2)
A 		6.2
(-3)
A 		14
C 26.9
(1.6)
P 		31.2
(3)
P 		21.3
(-0.3)
P 		13.1
(-3)
P 		18
avr 18.8
(1.3) 		23.6
(3) 		11.4
(-1.4) 		6.9
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.7
(-1.5)
A 		17.1
(3)
M 		10.1
(0.5)
A 		10.7
(0.7)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		17
B 15.3
(2.3)
A 		16.2
(3)
P 		12.8
(0.2)
P 		8.8
(-3)
A 		15.2
(2.2)
A 		9.3
(-2.6)
A 		7
C 15.7
(0.2)
A 		25.6
(3)
P 		13.9
(-0.3)
A 		8
(-1.9)
A 		7.9
(-1.9)
P 		4.1
(-3)
A 		22
avr 11.9
(-0.1) 		19.6
(3) 		12.3
(0.1) 		9.2
(-1.2) 		7.9
(-1.7) 		4.7
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184099_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7372
Sequence Type Exemplar sequence
Representative Public ID C24H11.8 NCBI
Target Description C24H11.8 /REP_DB=WormBase Gene ID /WP=CE19702 /TR=Q9XVD1 /GB=CAB03914.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067128
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000008955 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11795672:11802968:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067128 7/11 Cross Hyb Matching Probes None
SNAP00000008948 7/11 Cross Hyb Matching Probes None
C24H11.8 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11795667-11803066(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03914 Hypothetical protein C24H11.8 [Caenorhabditis elegans] ref|NP_499529.2| TWiK family of potassium channels family member (twk-39) [Caenorhabditis elegans] 0.0
blast CAE67719 Hypothetical protein CBG13294 [Caenorhabditis briggsae] 0.0
blast XP_396557 PREDICTED: similar to RE05370p [Apis mellifera] 6.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008955 6 21-43,121-143,150-172,176-193,445-467,506-528
Sequence
Target Sequence 
>C. ELEGANS:184099_AT
cagcgttggtatttgcatcgtcttcgcgttcatttctggcggagcttggctgttctcctg
gtgggagaattggaatggatttgatggtgcctattattgctttattactttgagtacaat
tggttttggagacatcgtacctggtcaggctcttgacgaagggagccaggagaaacttgt
agtttgtgcgctttatctgctgtttggaatggctcttattgcgatgtgcttcaagttaat
gcaagacgatgttgtacaaaaggcgagatggctcgggcagaaaattgggattcttgctcg
gccgtttgagttgtctcgtgaaattgcaaaacatgcaatattcctattcggatactcggt
ttcaatccgcgatgagtcgtcagaatccgagtcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCGTTGGTATTTGCATCGTCTTC 316 203 1494 Antisense
TCTTCGCGTTCATTTCTGGCGGAGC 429 617 1514 Antisense
GGTGCCTATTATTGCTTTATTACTT 528 501 1579 Antisense
GAGACATCGTACCTGGTCAGGCTCT 272 385 1622 Antisense
TTGTGCGCTTTATCTGCTGTTTGGA 377 709 1677 Antisense
GAATGGCTCTTATTGCGATGTGCTT 30 333 1700 Antisense
AAAATTGGGATTCTTGCTCGGCCGT 194 129 1774 Antisense
TCGGCCGTTTGAGTTGTCTCGTGAA 617 607 1791 Antisense
ATTCCTATTCGGATACTCGGTTTCA 560 5 1833 Antisense
TCGGTTTCAATCCGCGATGAGTCGT 187 605 1849 Antisense
GATGAGTCGTCAGAATCCGAGTCGG 534 409 1864 Antisense
Sequence Source Affymetrix Proprietary Database