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[184098_s_at]

Description Y73F4A.2 /REP_DB=WormBase Gene ID /WP=CE20368 /TR=Q9XWC3 /GB=CAA21754.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 06      6grp_total > 21      4grp_total > 29      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10637
1 2 3 4 range
A 14476.7
(3)
P 		7669.3
(-1.1)
P 		4536
(-3)
P 		13470.9
(2.4)
P 		9941
B 8539.8
(0.9)
P 		10381.2
(2.4)
P 		3839.9
(-3)
P 		11059.4
(3)
P 		7220
C 14364.5
(3)
P 		9457.5
(-0.1)
P 		4778.5
(-3)
P 		10410.6
(0.5)
P 		9586
avr 12460.3
(3) 		9169.3
(0.6) 		4384.8
(-3) 		11647
(2.4) 		8076

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10484
1 2 3 4 5 6 range
A 12796.5
(2.3)
P 		12931.6
(2.4)
P 		13776.8
(3)
P 		7891.5
(-1)
P 		6107
(-2.3)
P 		5011.5
(-3)
P 		8765
B 7408.1
(-0.6)
P 		13443.1
(3)
P 		9403.1
(0.6)
P 		9634.5
(0.7)
P 		5846.9
(-1.5)
P 		3350.6
(-3)
P 		10093
C 9733.5
(0.8)
P 		13550.4
(3)
P 		9698.9
(0.7)
P 		6914.4
(-0.9)
P 		5280
(-1.8)
P 		3293.3
(-3)
P 		10257
avr 9979.4
(0.9) 		13308.4
(3) 		10959.6
(1.5) 		8146.8
(-0.3) 		5744.6
(-1.8) 		3885.1
(-3) 		9423
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4381
1 2 3 4 range
A 5271
(3)
P 		1664.8
(-2.3)
P 		1185.8
(-3)
P 		1971.9
(-1.8)
P 		4085
B 2723.3
(3)
P 		2563.9
(2.5)
P 		889.8
(-3)
P 		2356.8
(1.8)
P 		1834
C 4755.1
(3)
P 		2719.1
(-1)
P 		1665.5
(-3)
P 		1755.4
(-2.8)
P 		3090
avr 4249.8
(3) 		2315.9
(-0.9) 		1247
(-3) 		2028
(-1.4) 		3003

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3497
1 2 3 4 5 6 range
A 2358.9
(-1)
P 		4599.1
(3)
P 		3000.3
(0.2)
P 		2001.5
(-1.6)
P 		1842.8
(-1.9)
P 		1220.1
(-3)
P 		3379
B 2577.7
(-0.5)
P 		4474.6
(3)
P 		2283.4
(-1.1)
P 		2551.9
(-0.6)
P 		2375.5
(-0.9)
P 		1249.4
(-3)
P 		3225
C 3607.8
(2)
P 		4134.6
(3)
P 		2468.5
(-0.3)
P 		1390.5
(-2.4)
P 		1708.5
(-1.8)
P 		1102.5
(-3)
P 		3032
avr 2848.1
(0.1) 		4402.8
(3) 		2584.1
(-0.4) 		1981.3
(-1.5) 		1975.6
(-1.5) 		1190.7
(-3) 		3212
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184098_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8663
Sequence Type Exemplar sequence
Representative Public ID Y73F4A.2 NCBI
Target Description Y73F4A.2 /REP_DB=WormBase Gene ID /WP=CE20368 /TR=Q9XWC3 /GB=CAA21754.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069172 NCBI Caenorhabditis elegans Y73F4A.2 (Y73F4A.2) mRNA, complete cds. 11/11 None
SNAP00000041257 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9042655:9043290:-1 11/11 None
GENEFINDER00000041260 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9042655:9043290:-1 11/11 None
Y73F4A.2 ENSEMBL cdna:known chromosome:CEL140:IV:9042381:9043327:-1 gene:Y73F4A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9042660-9043296(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73F4A.2
Entrez Gene 177722 Entrez gene
SwissProt Q9XWC3 EMBL-EBI
WormBase CE20368 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6584 catecholamine metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4500 dopamine beta-monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21754 Hypothetical protein Y73F4A.2 [Caenorhabditis elegans] ref|NP_501573.1| Y73F4A.2 [Caenorhabditis elegans] 7.0E-89
blast CAE74093 Hypothetical protein CBG21753 [Caenorhabditis briggsae] 8.0E-72
blast CAA21756 Hypothetical protein Y73F4A.3 [Caenorhabditis elegans] ref|NP_501572.1| Y73F4A.3 [Caenorhabditis elegans] 5.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR005018 EMBL-EBI DOMON domain 3.2E-22
Sequence
Target Sequence 
>C. ELEGANS:184098_S_AT
tgcctttgcatccgccaaaacatgcaaatacgacagttccgattttgaagtttactggcg
attcgctaataattcgattaatatgcaattcatgaacactgatattaaaaataacgaatg
gactggagttgggtttggagatgataagaacaactttgtcggagtcttcttcatggtgtc
caacaatcaagttactgtccgtacaggatcaaccactcaacacggaccaccaactttcac
tcaatctggaacaaacactgcttcagtatccactcaagcactaaactatttcccagagga
taagacaatgagtgctgtcgttcaaattccaattcaattcaatggaagaagccttcaatc
gtgccaaaaatggaggttcgtcaagtctggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCTTTGCATCCGCCAAAACATGC 51 585 51 Antisense
GCAAATACGACAGTTCCGATTTTGA 542 315 74 Antisense
GAACAACTTTGTCGGAGTCTTCTTC 696 351 198 Antisense
GAGTCTTCTTCATGGTGTCCAACAA 182 399 212 Antisense
GTCCAACAATCAAGTTACTGTCCGT 481 477 228 Antisense
GTCCGTACAGGATCAACCACTCAAC 142 475 247 Antisense
ACACTGCTTCAGTATCCACTCAAGC 644 109 305 Antisense
CAAGCACTAAACTATTTCCCAGAGG 323 185 325 Antisense
GAGTGCTGTCGTTCAAATTCCAATT 125 401 360 Antisense
GGAAGAAGCCTTCAATCGTGCCAAA 359 531 394 Antisense
AATGGAGGTTCGTCAAGTCTGGCAA 55 163 419 Antisense
Sequence Source Affymetrix Proprietary Database