[Home] | [Total List]

[184097_at]

Description F26F4.4 /REP_DB=WormBase Gene ID /WP=CE01261 /TR=Q19819 /GB=AAA91219.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 96      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 84      6grp_total > 86      4grp_total > 0      6grp_highest_sub > In      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 503
1 2 3 4 range
A 602.8
(-1.7)
P 		524
(-3)
P 		697.6
(-0.2)
P 		896.1
(3)
P 		372
B 686.2
(-2)
P 		615.3
(-3)
P 		644
(-2.6)
P 		1026.7
(3)
P 		411
C 573.7
(-3)
P 		633
(-2)
P 		781.2
(0.5)
P 		932
(3)
P 		358
avr 620.9
(-2.5) 		590.8
(-3) 		707.6
(-1.1) 		951.6
(3) 		361

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 447.8
(-3)
P 		536.3
(-1.9)
P 		490.4
(-2.5)
P 		624.6
(-0.8)
P 		659.1
(-0.3)
P 		921.2
(3)
P 		473
B 507
(-2.4)
P 		524
(-2)
P 		479.1
(-3)
P 		596.8
(-0.4)
P 		634.4
(0.5)
P 		747.4
(3)
P 		268
C 531.8
(-3)
P 		569.6
(-2.3)
P 		641.9
(-0.9)
P 		645.3
(-0.8)
P 		623.5
(-1.3)
P 		847.5
(3)
P 		316
avr 495.5
(-3) 		543.3
(-2.2) 		537.1
(-2.3) 		622.2
(-0.8) 		639
(-0.5) 		838.7
(3) 		343
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 219.5
(3)
P 		113.7
(-3)
P 		182.4
(0.9)
P 		131.2
(-2)
P 		106
B 218.8
(3)
P 		152
(-2.8)
P 		149.2
(-3)
P 		218.8
(3)
P 		70
C 189.9
(-1.3)
P 		182
(-1.7)
P 		272.3
(3)
P 		157.2
(-3)
P 		115
avr 209.4
(3) 		149.2
(-3) 		201.3
(2.2) 		169.1
(-1) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 82.5
(-3)
P 		190.7
(1.6)
P 		106.8
(-2)
P 		158.4
(0.2)
P 		198.9
(1.9)
P 		224.3
(3)
P 		142
B 176.4
(-0.8)
P 		174.4
(-0.9)
P 		116.3
(-3)
P 		158.1
(-1.5)
P 		257.7
(2.2)
P 		278.7
(3)
P 		162
C 197.1
(-0.4)
P 		173.8
(-1.3)
P 		163.4
(-1.7)
P 		129.8
(-3)
P 		201.8
(-0.2)
P 		283.7
(3)
P 		154
avr 152
(-2) 		179.6
(-0.7) 		128.8
(-3) 		148.8
(-2.1) 		219.5
(1.1) 		262.2
(3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6584
Sequence Type Exemplar sequence
Representative Public ID F26F4.4 NCBI
Target Description F26F4.4 /REP_DB=WormBase Gene ID /WP=CE01261 /TR=Q19819 /GB=AAA91219.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065626 NCBI Caenorhabditis elegans F26F4.4 (F26F4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000005770 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4899846:4902922:1 11/11 None
SNAP00000005750 ENSEMBL cdna:SNAP chromosome:CEL140:III:4900719:4902922:1 11/11 None
F26F4.4.1 ENSEMBL cdna:known chromosome:CEL140:III:4899675:4903104:1 gene:F26F4.4 11/11 None
F26F4.4.2 ENSEMBL cdna:known chromosome:CEL140:III:4900683:4903104:1 gene:F26F4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4899785-4902922(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-340
Ensembl F26F4.4
Entrez Gene 175655 Entrez gene
SwissProt Q19819 EMBL-EBI
WormBase CE30767 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.15405.1.A1_AT similar to MLN 64 protein (StAR-related lipid transfer protein 3) (StARD3) (START domain-containing protein 3) (CAB1 protein) cfa
CANINE_2:CFA.20925.1.S1_S_AT similar to MLN 64 protein (StAR-related lipid transfer protein 3) (StARD3) (START domain-containing protein 3) (CAB1 protein) cfa
CANINE_2:CFAAFFX.25090.1.S1_AT similar to MLN 64 protein (StAR-related lipid transfer protein 3) (StARD3) (START domain-containing protein 3) (CAB1 protein) cfa
DROSOPHILA_2:1625637_AT dm
DROSGENOME1:154214_AT dm
CHICKEN:GGA.20039.1.S1_AT similar to Steroidogenic acute regulatory protein related gga
HUGENEFL:X80198_AT START domain containing 3 hs
HG-U133A:202991_AT START domain containing 3 hs
HG-U133_PLUS_2:202991_AT START domain containing 3 hs
HG-FOCUS:202991_AT START domain containing 3 hs
HG-U133A_2:202991_AT START domain containing 3 hs
U133_X3P:G5803089_3P_X_AT START domain containing 3 hs
U133_X3P:G5803089_3P_AT START domain containing 3 hs
HG-U95AV2:37355_AT START domain containing 3 hs
MG-U74AV2:95607_AT START domain containing 3 mm
MU11KSUBB:MSA.2277.0_S_AT START domain containing 3 mm
MG-U74AV2:162228_F_AT START domain containing 3 mm
MOE430A:1417405_AT START domain containing 3 mm
MOUSE430A_2:1417405_AT START domain containing 3 mm
MOUSE430_2:1417405_AT START domain containing 3 mm
MU19KSUBC:TC39384_S_AT START domain containing 3, mRNA (cDNA clone MGC:6996 IMAGE:3155179) mm
Protein Similarities
Method ID Description E-Value
blast AAA91219 Hypothetical protein F26F4.4 [Caenorhabditis elegans] ref|NP_498027.2| F26F4.4 [Caenorhabditis elegans] 0.0
blast CAE71092 Hypothetical protein CBG17942 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002913 EMBL-EBI Lipid-binding START 3.2E-59
Pfam IPR002913 EMBL-EBI Lipid-binding START 3.2E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498027.2 4 23-45,65-87,96-118,128-150
F26F4.4.1 4 23-45,65-87,96-118,128-150
F26F4.4.2 4 23-45,65-87,96-118,128-150
GENEFINDER00000005770 4 128-150,170-192,201-223,233-255
SNAP00000005750 4 23-45,65-87,96-118,128-150
Sequence
Target Sequence 
>C. ELEGANS:184097_AT
gaagtgcggctgaattctcttcagatgaagaagctcgatcacgtcttttagttccacctg
atacgaaaagattatttgaaattactctcagagaatgtcttgatcaagttgaagaattaa
tgagagattcgaggcttggaggatggaaaacacttcgttcagctaatccaacagtacttc
aaggaccggataattatttcctagtaatcgaaggaaaaatgattgctcacttggataatg
ccactgatttgtactattccgtgagtgctccagcaatgcgtggatatatttcctctcgtg
acttcctggatctacgaaagataaagcttgattcgtcagcagatgtctacaccggatact
ttgtttcagtagaatccaatttatgcccaaacaatggaaatccgaaaatcgtacgaggac
acaatttcccatccatgattcgaacattgaaagatgaagcaggagtaacttatttcgaat
ggctcatgaagactgatctcaaaggtggccttccacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTGCGGCTGAATTCTCTTCAGA 303 335 839 Antisense
GAAGCTCGATCACGTCTTTTAGTTC 49 343 868 Antisense
GTCTTTTAGTTCCACCTGATACGAA 295 469 881 Antisense
AACACTTCGTTCAGCTAATCCAACA 27 135 987 Antisense
TACTATTCCGTGAGTGCTCCAGCAA 655 643 1090 Antisense
GCGTGGATATATTTCCTCTCGTGAC 100 293 1116 Antisense
CTCTCGTGACTTCCTGGATCTACGA 580 231 1131 Antisense
GATTCGTCAGCAGATGTCTACACCG 255 433 1168 Antisense
GTCTACACCGGATACTTTGTTTCAG 265 467 1183 Antisense
ACGAGGACACAATTTCCCATCCATG 203 93 1251 Antisense
TGATCTCAAAGGTGGCCTTCCACGC 608 563 1332 Antisense
Sequence Source Affymetrix Proprietary Database