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[184096_at]

Description Y8A9A.5 /REP_DB=WormBase Gene ID /WP=CE21339 /TR=Q9TYK5 /GB=AAK18996.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.2
(-3)
A 		10.7
(2.4)
A 		11.7
(3)
A 		3.1
(-1.9)
A 		11
B 3
(-2.6)
A 		18.7
(3)
A 		5.1
(-1.8)
A 		1.8
(-3)
A 		17
C 2.9
(-2.7)
A 		10.4
(3)
A 		5.2
(-0.9)
A 		2.5
(-3)
A 		8
avr 2.4
(-3) 		13.3
(3) 		7.3
(-0.3) 		2.5
(-2.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3.2
(-1.8)
A 		12.4
(3)
A 		0.9
(-3)
A 		7.1
(0.2)
A 		4.4
(-1.2)
A 		6.1
(-0.3)
A 		12
B 2.2
(-2.4)
A 		6.4
(0.2)
A 		10.9
(3)
A 		1.8
(-2.7)
A 		1.5
(-2.9)
A 		1.3
(-3)
A 		10
C 5.3
(0.4)
A 		3.4
(-1.2)
A 		1.2
(-3)
A 		8.5
(3)
A 		3.5
(-1.1)
A 		2.2
(-2.2)
A 		7
avr 3.6
(-2.3) 		7.4
(3) 		4.3
(-1.3) 		5.8
(0.8) 		3.1
(-3) 		3.2
(-2.9) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.4
(-3)
A 		2.3
(1.2)
A 		3.1
(3)
A 		0.5
(-2.8)
A 		3
B 1
(-2.1)
A 		4.6
(3)
A 		1.2
(-1.9)
A 		0.4
(-3)
A 		4
C 1
(-1.6)
A 		3
(3)
A 		1.8
(0.2)
A 		0.4
(-3)
A 		3
avr 0.8
(-2.2) 		3.3
(3) 		2
(0.3) 		0.4
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.6
(-2.4)
A 		4.4
(3)
A 		0.2
(-3)
A 		1.8
(-0.7)
A 		1.3
(-1.4)
A 		1.5
(-1.1)
A 		4
B 0.8
(-2.1)
A 		2.1
(1.6)
A 		2.6
(3)
A 		0.5
(-3)
A 		0.6
(-2.7)
A 		0.5
(-3)
A 		2
C 2
(3)
A 		1
(-0.5)
A 		0.3
(-3)
A 		1.7
(1.9)
A 		1.1
(-0.2)
A 		0.7
(-1.6)
A 		2
avr 1.1
(-2.3) 		2.5
(3) 		1
(-2.6) 		1.3
(-1.5) 		1
(-2.6) 		0.9
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5121
Sequence Type Exemplar sequence
Representative Public ID Y8A9A.5 NCBI
Target Description Y8A9A.5 /REP_DB=WormBase Gene ID /WP=CE21339 /TR=Q9TYK5 /GB=AAK18996.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062252(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062252 NCBI Caenorhabditis elegans Y8A9A.5 (Y8A9A.5) mRNA, complete cds. 11/11 None
SNAP00000029989 ENSEMBL cdna:SNAP chromosome:CEL140:II:3792518:3793419:-1 11/11 None
Y8A9A.5 ENSEMBL cdna:known chromosome:CEL140:II:3792518:3793473:-1 gene:Y8A9A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029992 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3792516-3793472(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y8A9A.5
Entrez Gene 189402 Entrez gene
SwissProt Q9TYK5 EMBL-EBI
WormBase CE21339 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18996 Hypothetical protein Y8A9A.5 [Caenorhabditis elegans] ref|NP_494653.1| Y8A9A.5 [Caenorhabditis elegans] 1.0E-173
blast AAK18996 Hypothetical protein Y8A9A.5 [Caenorhabditis elegans] ref|NP_494653.1| Y8A9A.5 [Caenorhabditis elegans] 1.0E-162
blast AAK31516 Hypothetical protein F36H5.5 [Caenorhabditis elegans] ref|NP_494071.1| F36H5.5 [Caenorhabditis elegans] 2.0E-18
blast AAK31516 Hypothetical protein F36H5.5 [Caenorhabditis elegans] ref|NP_494071.1| F36H5.5 [Caenorhabditis elegans] 3.0E-18
blast AAK18930 Hypothetical protein F12E12.7 [Caenorhabditis elegans] ref|NP_494640.1| F12E12.7 [Caenorhabditis elegans] 1.0E-16
blast AAK18930 Hypothetical protein F12E12.7 [Caenorhabditis elegans] ref|NP_494640.1| F12E12.7 [Caenorhabditis elegans] 5.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.1E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.1E-6
Sequence
Target Sequence 
>C. ELEGANS:184096_AT
tcgaatgagccattatcgctcgggaatccaacacatttatacttggaaaagtgcgaattt
gagtgaaagagatctaatcgatcatattatggatataaccgaaaactcggaaatcaagga
gctctacttcaaaagtgattaccataacgttatatttttgcacaattgcttcaagggact
gaaaatcggaaaactcaggtctggtgtgaactctgaatcgtttcaagctttccaaaagtt
aattccaagcgataaattggatattgaaaaggacaccggagaccacgaaatgtctggaat
tttgtgtcagaacctaaatcaattagttatatggactgaaagatctgtgagcttagatga
cctatttctcaacaatgcgctggctgtgaaaattaacagtgctcagttcgactacaagga
tcttaacttgtttttgaagagctggattagtggatcaaacccaagacttgagtacttaac
cttgcatttttccacgaggcacttggaatataataccatggaatatgtgctcggaggaat
tgattttcaaaaaaaggattactgcgatttcagccatgatctcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAATGAGCCATTATCGCTCGGGA 325 599 294 Antisense
ATCGCTCGGGAATCCAACACATTTA 198 37 308 Antisense
AAATCGGAAAACTCAGGTCTGGTGT 171 111 476 Antisense
AGGTCTGGTGTGAACTCTGAATCGT 48 59 490 Antisense
GAATCGTTTCAAGCTTTCCAAAAGT 611 327 508 Antisense
AAGGACACCGGAGACCACGAAATGT 254 159 562 Antisense
GACCTATTTCTCAACAATGCGCTGG 407 383 652 Antisense
AACAGTGCTCAGTTCGACTACAAGG 706 135 688 Antisense
AGACTTGAGTACTTAACCTTGCATT 269 65 757 Antisense
ACCTTGCATTTTTCCACGAGGCACT 533 87 772 Antisense
ACTGCGATTTCAGCCATGATCTCAG 206 97 854 Antisense
Sequence Source Affymetrix Proprietary Database