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[184095_at]

Description F17E9.5 /REP_DB=WormBase Gene ID /WP=CE07072 /TR=O61521 /GB=AAC05107.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 2.7
(-3)
A 		59.7
(3)
A 		5.8
(-2.7)
A 		4.5
(-2.8)
A 		57
B 2.5
(-3)
A 		8.2
(-1.9)
A 		3.4
(-2.8)
A 		33.6
(3)
A 		31
C 6.1
(-1.9)
A 		10.8
(3)
A 		5
(-3)
A 		9.6
(1.8)
A 		6
avr 3.8
(-3) 		26.2
(3) 		4.7
(-2.8) 		15.9
(0.2) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 612
1 2 3 4 5 6 range
A 22.8
(-2.8)
A 		4.5
(-3)
A 		5.5
(-3)
A 		28.6
(-2.8)
A 		381.1
(0.7)
P 		614.3
(3)
P 		610
B 2.6
(-3)
A 		8.3
(-2.9)
A 		17
(-2.8)
A 		55.5
(-2.4)
A 		430
(2)
P 		512.6
(3)
P 		510
C 2.1
(-3)
A 		8
(-2.9)
A 		10
(-2.9)
A 		83.4
(-2)
A 		419.9
(2.1)
P 		489.6
(3)
P 		488
avr 9.2
(-3) 		6.9
(-3) 		10.8
(-3) 		55.8
(-2.4) 		410.3
(1.6) 		538.8
(3) 		532
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1
(-2.9)
A 		13
(3)
A 		1.5
(-2.6)
A 		0.7
(-3)
A 		12
B 0.8
(-3)
A 		2
(-1.9)
A 		0.8
(-3)
A 		7.2
(3)
A 		6
C 2
(-1.4)
A 		3.1
(3)
A 		1.7
(-2.6)
A 		1.6
(-3)
A 		2
avr 1.3
(-3) 		6
(3) 		1.3
(-3) 		3.2
(-0.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 4.2
(-2.9)
A 		1.6
(-3)
A 		1.2
(-3)
A 		7.2
(-2.8)
A 		115
(1.6)
P 		149.6
(3)
P 		148
B 0.9
(-3)
A 		2.8
(-2.9)
A 		4.1
(-2.9)
A 		14.7
(-2.6)
A 		174.7
(2.5)
P 		191.2
(3)
P 		190
C 0.8
(-3)
A 		2.4
(-2.9)
A 		2.5
(-2.9)
A 		16.8
(-2.4)
A 		135.9
(2)
P 		163.9
(3)
P 		163
avr 2
(-3) 		2.3
(-3) 		2.6
(-3) 		12.9
(-2.6) 		141.9
(2.1) 		168.2
(3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8535
Sequence Type Exemplar sequence
Representative Public ID F17E9.5 NCBI
Target Description F17E9.5 /REP_DB=WormBase Gene ID /WP=CE07072 /TR=O61521 /GB=AAC05107.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069011 NCBI Caenorhabditis elegans F17E9.5 (F17E9.5) mRNA, complete cds. 11/11 None
SNAP00000000485 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8345799:8346486:1 11/11 None
GENEFINDER00000000502 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8339848:8346486:1 11/11 None
F17E9.5 ENSEMBL cdna:known chromosome:CEL140:IV:8345799:8346528:1 gene:F17E9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8345804-8346492(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17E9.5
Entrez Gene 177629 Entrez gene
SwissProt O61521 EMBL-EBI
WormBase CE07072 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC05108 Hypothetical protein F17E9.8 [Caenorhabditis elegans] ref|NP_501410.1| F17E9.8 [Caenorhabditis elegans] 1.0E-178
blast AAC05109 Hypothetical protein F17E9.7 [Caenorhabditis elegans] ref|NP_501411.1| F17E9.7 [Caenorhabditis elegans] 1.0E-137
blast AAC05107 Hypothetical protein F17E9.5 [Caenorhabditis elegans] ref|NP_501412.1| F17E9.5 [Caenorhabditis elegans] 7.0E-86
blast AAC05107 Hypothetical protein F17E9.5 [Caenorhabditis elegans] ref|NP_501412.1| F17E9.5 [Caenorhabditis elegans] 8.0E-85
blast AAC05107 Hypothetical protein F17E9.5 [Caenorhabditis elegans] ref|NP_501412.1| F17E9.5 [Caenorhabditis elegans] 7.0E-77
blast AAF59465 Hypothetical protein Y38C1AA.7 [Caenorhabditis elegans] ref|NP_499872.1| Y38C1AA.7 [Caenorhabditis elegans] 2.0E-66
blast CAE58507 Hypothetical protein CBG01657 [Caenorhabditis briggsae] 3.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 8.1E-28
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 8.7E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501412.1 3 35-57,67-86,111-133
F17E9.5 3 35-57,67-86,111-133
SNAP00000000485 3 48-70,80-102,123-145
GENEFINDER00000000502 8 261-283,296-315,325-347,637-659,701-723,803-825,835-854,879-901
Sequence
Target Sequence 
>C. ELEGANS:184095_AT
caaatcagtctctgctcgaatcaccgattctctactcactcgactacttctctgcaatgg
atcaaatcccaccgtacgagttcaataagtacgtgctctacgctcgtggtgccgtcatcg
tgtgtgcttcatttgagctcctgatggttctgttcggttccctcggcgattgcaatttcc
ttgccaagctattctacttcatcttcctcggtggagcagttgccgtctcatcgcacaaca
ttgctctcaacattgatggtcgcgaggagatcaacaaggttcttacctcgtctgacaatg
aagttcgtggaaagtctgccgcattggttcttgtcccagctcttgctggtatcttcgtct
tcttgtgtgtttctgggcatgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATCAGTCTCTGCTCGAATCACC 166 193 23 Antisense
CAAATCCCACCGTACGAGTTCAATA 601 191 85 Antisense
TTTGAGCTCCTGATGGTTCTGTTCG 415 665 154 Antisense
GGCGATTGCAATTTCCTTGCCAAGC 421 541 187 Antisense
TGCCAAGCTATTCTACTTCATCTTC 246 587 204 Antisense
TCATCTTCCTCGGTGGAGCAGTTGC 383 621 221 Antisense
CTCATCGCACAACATTGCTCTCAAC 422 229 249 Antisense
AACAAGGTTCTTACCTCGTCTGACA 375 135 295 Antisense
AAAGTCTGCCGCATTGGTTCTTGTC 330 121 333 Antisense
CCAGCTCTTGCTGGTATCTTCGTCT 492 273 358 Antisense
TTCTTGTGTGTTTCTGGGCATGCAT 53 689 382 Antisense
Sequence Source Affymetrix Proprietary Database