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[184094_at] 7TM chemoreceptor, srx family

Description T01C4.6 /REP_DB=WormBase Gene ID /WP=CE12938 /TR=Q94299 /GB=AAB09181.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 09      6grp_cgc > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 2.6
(-2.1)
A 		6
(1.5)
A 		1.8
(-3)
A 		7.4
(3)
A 		6
B 1.4
(-3)
A 		3.6
(-0.1)
A 		5.9
(3)
A 		3.1
(-0.7)
A 		5
C 1.4
(-3)
A 		1.9
(-2.9)
A 		1.9
(-2.9)
A 		40.8
(3)
A 		39
avr 1.8
(-3) 		3.8
(-2.2) 		3.2
(-2.5) 		17.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 21.9
(3)
A 		4.3
(-2.1)
A 		1.3
(-3)
A 		5.2
(-1.9)
A 		1.5
(-2.9)
A 		2
(-2.8)
A 		21
B 1.5
(-2.5)
A 		3.9
(3)
A 		1.7
(-2.1)
A 		1.3
(-3)
A 		1.9
(-1.6)
A 		1.6
(-2.3)
A 		3
C 3.9
(0.7)
A 		2
(-1.9)
A 		1.2
(-3)
A 		5.6
(3)
A 		1.3
(-2.9)
A 		1.6
(-2.5)
A 		4
avr 9.1
(3) 		3.4
(-1.4) 		1.4
(-3) 		4
(-1) 		1.6
(-2.8) 		1.7
(-2.8) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.9
(0)
A 		1.3
(3)
A 		0.5
(-3)
A 		1.1
(1.5)
A 		1
B 0.4
(-3)
A 		0.9
(0)
A 		1.4
(3)
A 		0.7
(-1.2)
A 		1
C 0.5
(-3)
A 		0.6
(-2.9)
A 		0.7
(-2.8)
A 		6.9
(3)
A 		6
avr 0.6
(-3) 		0.9
(-2.2) 		0.9
(-2.2) 		2.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4
(3)
A 		1.5
(-1.1)
A 		0.3
(-3)
A 		1.3
(-1.4)
A 		0.4
(-2.8)
A 		0.5
(-2.7)
A 		4
B 0.5
(-1.8)
A 		1.3
(3)
A 		0.4
(-2.4)
A 		0.3
(-3)
A 		0.8
(0)
A 		0.6
(-1.2)
A 		1
C 1.4
(3)
A 		0.6
(-1.4)
A 		0.3
(-3)
A 		1.1
(1.4)
A 		0.4
(-2.5)
A 		0.5
(-1.9)
A 		1
avr 2
(3) 		1.1
(-0.2) 		0.3
(-3) 		0.9
(-0.9) 		0.5
(-2.3) 		0.5
(-2.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184094_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12207
Sequence Type Exemplar sequence
Representative Public ID T01C4.6 NCBI
Target Description T01C4.6 /REP_DB=WormBase Gene ID /WP=CE12938 /TR=Q94299 /GB=AAB09181.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072406
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072406 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-36) (srx-36) mRNA, complete cds. A 
T01C4.6 ENSEMBL cdna:known chromosome:CEL140:V:7132299:7133666:-1 gene:T01C4.6 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016306 4/11 Cross Hyb Matching Probes None
GENEFINDER00000016310 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7131738-7133555(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-36
Ensembl T01C4.6
Entrez Gene 187946 Entrez gene
SwissProt Q94299 EMBL-EBI
WormBase CE36562 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504807 Serpentine Receptor, class X family member (srx-36) [Caenorhabditis elegans] gb|AAB09181.2| Serpentine receptor, class x protein 36 [Caenorhabditis elegans] 1.0E-163
blast NP_504805 Serpentine Receptor, class X family member (srx-35) [Caenorhabditis elegans] gb|AAB09180.2| Serpentine receptor, class x protein 35 [Caenorhabditis elegans] 2.0E-74
blast CAE72007 Hypothetical protein CBG19086 [Caenorhabditis briggsae] 3.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504807.2 7 5-27,48-67,77-99,120-142,168-190,211-233,243-265
T01C4.6 7 5-27,48-67,77-99,120-142,168-190,211-233,243-265
Sequence
Target Sequence 
>C. ELEGANS:184094_AT
acagtcgttcagtcaagcaatatatttgctggtaaccacttcctgttttgtaattatccc
aatgtatattacaaatccagttgctgaattaataatgggtactttcttttggccaacgat
tcatgcattggacggagccatcactttatatttcaacactgaaattcaaagatctttatt
gaaatattgttccaaaacaagcctcatgatctgggcactggatcttgacgacgacgctga
cactcttctgaatttggtatcttctgccgggttatgctctggagggagtggtgataaaat
aacatataaatgtgttccgattgatgacgtcagatggtggactcctgagaattcagacga
aaacagacaaggacaatgtggaaaatcagctccatttgataaaactgcgcaaagatggaa
attattgaagtttgcggcgaacgctactggaaaggcattcgcaatgcccttggtgcaatt
gttccgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGTCGTTCAGTCAAGCAATATAT 530 107 606 Antisense
ATTTGCTGGTAACCACTTCCTGTTT 221 17 629 Antisense
CACTTCCTGTTTTGTAATTATCCCA 375 195 642 Antisense
GTACTTTCTTTTGGCCAACGATTCA 130 459 704 Antisense
GATTCATGCATTGGACGGAGCCATC 400 429 723 Antisense
GGAGCCATCACTTTATATTTCAACA 251 523 739 Antisense
GTTCCAAAACAAGCCTCATGATCTG 245 441 794 Antisense
GAAGTTTGCGGCGAACGCTACTGGA 511 335 1032 Antisense
GAACGCTACTGGAAAGGCATTCGCA 77 347 1044 Antisense
GGCATTCGCAATGCCCTTGGTGCAA 571 535 1059 Antisense
GCCCTTGGTGCAATTGTTCCGAATG 331 287 1071 Antisense
Sequence Source Affymetrix Proprietary Database