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[184093_at]

Description M01H9.1 /REP_DB=WormBase Gene ID /WP=CE12304 /TR=Q94282 /GB=AAB09142.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 19      4grp_high_8_8 > 55      6grp_highest_nonorm > 64      6grp_total > 82      4grp_total > 48      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 897
1 2 3 4 range
A 880.7
(-2.9)
P 		1126.8
(-1)
P 		1661.1
(3)
P 		865.9
(-3)
P 		795
B 870
(-3)
P 		1302.8
(-0.1)
P 		1762.5
(3)
P 		1219.8
(-0.6)
P 		893
C 981.9
(-3)
P 		1211.4
(-1)
P 		1677.4
(3)
P 		1068.5
(-2.3)
P 		696
avr 910.9
(-3) 		1213.7
(-0.7) 		1700.3
(3) 		1051.4
(-1.9) 		789

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 898
1 2 3 4 5 6 range
A 405.8
(-3)
P 		1053.2
(2.1)
P 		1080.3
(2.3)
P 		1133.8
(2.7)
P 		1173.1
(3)
P 		732.8
(-0.4)
P 		767
B 566.8
(-3)
P 		1057.9
(1.3)
P 		1041.7
(1.2)
P 		1250.5
(3)
P 		1249.7
(3)
P 		938.6
(0.3)
P 		684
C 352.4
(-3)
P 		1185.1
(3)
P 		911.4
(1)
P 		1106.6
(2.4)
P 		1180.4
(3)
P 		989.6
(1.6)
P 		833
avr 441.7
(-3) 		1098.7
(2.2) 		1011.1
(1.5) 		1163.6
(2.7) 		1201.1
(3) 		887
(0.5) 		759
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 458
1 2 3 4 range
A 320.7
(0.8)
P 		244.6
(-0.7)
P 		434.2
(3)
P 		126.8
(-3)
P 		307
B 277.4
(-2.3)
P 		321.8
(-0.5)
P 		408.4
(3)
P 		259.9
(-3)
P 		149
C 325
(-0.9)
P 		348.3
(-0.5)
P 		584.6
(3)
P 		180.2
(-3)
P 		404
avr 307.7
(-0.5) 		304.9
(-0.6) 		475.7
(3) 		189
(-3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 74.8
(-3)
P 		374.6
(3)
P 		235.3
(0.2)
P 		287.6
(1.3)
P 		354
(2.6)
P 		178.4
(-0.9)
P 		300
B 197.2
(-3)
P 		352.1
(-0)
P 		253
(-1.9)
P 		331.2
(-0.4)
P 		507.7
(3)
P 		350
(-0)
P 		311
C 130.6
(-3)
P 		361.6
(2.5)
P 		232
(-0.6)
P 		222.5
(-0.8)
P 		381.9
(3)
P 		331.3
(1.8)
P 		251
avr 134.2
(-3) 		362.8
(1.9) 		240.1
(-0.7) 		280.4
(0.1) 		414.5
(3) 		286.6
(0.3) 		280
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10666
Sequence Type Exemplar sequence
Representative Public ID M01H9.1 NCBI
Target Description M01H9.1 /REP_DB=WormBase Gene ID /WP=CE12304 /TR=Q94282 /GB=AAB09142.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068177(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068177 NCBI Caenorhabditis elegans M01H9.1 (M01H9.1) mRNA, complete cds. 10/11 None
SNAP00000037487 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4487052:4488792:1 10/11 None
GENEFINDER00000037488 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4487052:4488792:1 10/11 None
M01H9.1 ENSEMBL cdna:known chromosome:CEL140:IV:4487052:4488792:1 gene:M01H9.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4487057-4488798(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01H9.1
Entrez Gene 187389 Entrez gene
SwissProt Q94282 EMBL-EBI
WormBase CE34580 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB09142 Hypothetical protein M01H9.1 [Caenorhabditis elegans] ref|NP_500578.2| M01H9.1 [Caenorhabditis elegans] 9.0E-90
blast CAE58537 Hypothetical protein CBG01696 [Caenorhabditis briggsae] 1.0E-73
blast CAE60119 Hypothetical protein CBG03662 [Caenorhabditis briggsae] 3.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 4.6E-6
Sequence
Target Sequence 
>C. ELEGANS:184093_AT
ctttttctccggaaccagcttgagacttaaggatgggactatggtagatgcaggagagca
cttgaaaggaaagattgtggtactgtacttctctgcaagctggtgcgggccatgccgtca
gtttactccaatcatgaaggagctgtatcagcagattgctgcaacaaatcaacccattga
ggtgattctgttgtcgagagactacatgcgattccagttggatgagtactatgagagcca
tggatgctcatggggtgtcgttccgttgagagaccccattattgaaaagtgtttggagaa
gtatgatgtgaaggctttgccgtcgtgccgagttgtcgatgagtttgggaattgtattga
tgctaatgctcgtcaaagtgttgaggtgaatatttttgaaaattggagaaatgtgccaga
aagttggagagagttctaccgcgaaaaatataaaatggccgaactcttcaacaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTTTCTCCGGAACCAGCTTGAGA 706 219 24 Antisense
TGCCGTCAGTTTACTCCAATCATGA 548 585 136 Antisense
ACCCATTGAGGTGATTCTGTTGTCG 547 89 195 Antisense
GAGACTACATGCGATTCCAGTTGGA 605 393 221 Antisense
ATGGATGCTCATGGGGTGTCGTTCC 586 49 263 Antisense
TTCCGTTGAGAGACCCCATTATTGA 402 699 284 Antisense
TGATGTGAAGGCTTTGCCGTCGTGC 89 567 327 Antisense
CCGTCGTGCCGAGTTGTCGATGAGT 358 265 343 Antisense
GATGCTAATGCTCGTCAAAGTGTTG 582 413 382 Antisense
GTTGGAGAGAGTTCTACCGCGAAAA 706 435 446 Antisense
AAATGGCCGAACTCTTCAACAAATG 386 119 476 Antisense
Sequence Source Affymetrix Proprietary Database