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[184092_at]

Description M03F8.6 /REP_DB=WormBase Gene ID /WP=CE12382 /TR=O16379 /GB=AAB65913.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 55      4grp_high_8_8 > 11      6grp_highest_nonorm > 61      6grp_total > 40      4grp_total > 21      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 454.6
(3)
P 		447.7
(2.6)
P 		374.1
(-2.1)
P 		359.5
(-3)
P 		95
B 477.3
(-0.8)
P 		406.1
(-2.8)
P 		399.9
(-3)
P 		607.3
(3)
P 		207
C 432
(0.1)
P 		374.9
(-1.1)
P 		281.3
(-3)
P 		575.3
(3)
P 		294
avr 454.6
(0.8) 		409.6
(-0.9) 		351.8
(-3) 		514
(3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 437
(1.2)
P 		490.9
(2.1)
P 		543.7
(3)
P 		456
(1.5)
P 		384.7
(0.3)
P 		191.4
(-3)
P 		352
B 336.5
(-0.2)
P 		434.6
(2)
P 		382.6
(0.8)
P 		482.2
(3)
P 		276.7
(-1.4)
P 		205
(-3)
P 		277
C 404.5
(0.8)
P 		395.6
(0.5)
P 		442
(1.8)
P 		484.3
(3)
P 		278.7
(-2.7)
P 		268.3
(-3)
P 		216
avr 392.7
(1.1) 		440.4
(2.2) 		456.1
(2.6) 		474.2
(3) 		313.4
(-0.8) 		221.6
(-3) 		253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 165.5
(3)
P 		97.2
(-0.6)
P 		97.8
(-0.6)
P 		52.6
(-3)
P 		113
B 152.2
(3)
P 		100.3
(-2.2)
P 		92.7
(-3)
P 		129.4
(0.7)
P 		60
C 143
(3)
P 		107.8
(-1.6)
P 		98
(-2.9)
P 		97
(-3)
P 		46
avr 153.6
(3) 		101.8
(-2.1) 		96.2
(-2.7) 		93
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 80.6
(-1.4)
P 		174.6
(3)
P 		118.4
(0.4)
P 		115.7
(0.2)
P 		116.1
(0.3)
P 		46.6
(-3)
P 		128
B 117.1
(0.6)
P 		144.7
(3)
P 		92.9
(-1.6)
P 		127.7
(1.5)
P 		112.4
(0.2)
P 		76.4
(-3)
P 		68
C 149.9
(3)
P 		120.7
(0.1)
P 		112.5
(-0.7)
P 		97.4
(-2.2)
P 		90.2
(-3)
P 		89.8
(-3)
P 		60
avr 115.9
(0.6) 		146.7
(3) 		107.9
(-0.1) 		113.6
(0.4) 		106.2
(-0.2) 		70.9
(-3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12432
Sequence Type Exemplar sequence
Representative Public ID M03F8.6 NCBI
Target Description M03F8.6 /REP_DB=WormBase Gene ID /WP=CE12382 /TR=O16379 /GB=AAB65913.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072149(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072149 NCBI Caenorhabditis elegans M03F8.6 (M03F8.6) mRNA, complete cds. 10/11 None
GENEFINDER00000043857 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5956578:5957434:-1 10/11 None
M03F8.6 ENSEMBL cdna:known chromosome:CEL140:V:5956498:5957434:-1 gene:M03F8.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043841 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5956466-5957434(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03F8.6
Entrez Gene 187432 Entrez gene
SwissProt O16379 EMBL-EBI
WormBase CE35343 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504550 M03F8.6 [Caenorhabditis elegans] gb|AAB65913.2| Hypothetical protein M03F8.6 [Caenorhabditis elegans] 1.0E-120
blast NP_504550 M03F8.6 [Caenorhabditis elegans] gb|AAB65913.2| Hypothetical protein M03F8.6 [Caenorhabditis elegans] 1.0E-114
blast CAE64537 Hypothetical protein CBG09280 [Caenorhabditis briggsae] 2.0E-78
blast CAE64537 Hypothetical protein CBG09280 [Caenorhabditis briggsae] 6.0E-77
Sequence
Target Sequence 
>C. ELEGANS:184092_AT
aaatacagtgcgccggacagatccagacaagaagtgaatctcactttggaaattattgat
atcagtttccatcgtgtcctatttgagttagttcaaacctggagagatgaacgattacgc
tttgttggatctgttcgagttccggttccatctcacattcaaccttggtatccggacaca
tatattcgaaacggatgggatgtgattgtggagcaaaaaagcttggaattgaactacgat
ggcacgttttcattgcgtcagaaatatcaagcaacattggatcttgatgaaaaaaacaaa
ttggatcttactttggtgatctcttcgttcaacaactacggaactgaacggatcaattac
aatctcatcagctctaaatcagaagtgaaaaactacgaacacatttctcttcacaaagtc
agccgaaaatctgataatatttattttgatgatcttcatattggaattcattactctcca
gttatatcccaaccaaccacaactcaaaaatacgaatcatcaactcttgctcaaaaatat
tccacgtgtattattgatttctcttgcttttcattggccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATACAGTGCGCCGGACAGATCCA 568 115 139 Antisense
GTTTCCATCGTGTCCTATTTGAGTT 378 449 203 Antisense
TTGGATCTGTTCGAGTTCCGGTTCC 448 703 263 Antisense
TTCCATCTCACATTCAACCTTGGTA 315 701 284 Antisense
TCAACCTTGGTATCCGGACACATAT 390 631 297 Antisense
GATGGCACGTTTTCATTGCGTCAGA 85 407 376 Antisense
GGTGATCTCTTCGTTCAACAACTAC 165 501 453 Antisense
ATCAATTACAATCTCATCAGCTCTA 29 27 490 Antisense
AACTACGAACACATTTCTCTTCACA 14 141 529 Antisense
ATTACTCTCCAGTTATATCCCAACC 294 13 608 Antisense
ATTTCTCTTGCTTTTCATTGGCCAT 152 17 695 Antisense
Sequence Source Affymetrix Proprietary Database