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[184091_at]

Description C26F1.5 /REP_DB=WormBase Gene ID /WP=CE06879 /TR=Q18230 /GB=AAB37077.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      6grp_highest_nonorm > 53      6grp_total > 81      4grp_total > 57      6grp_highest_sub > 04_05      6grp_cgc > 74      6grp_high1_sub > 02_03_04_05      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 852
1 2 3 4 range
A 152.5
(-2.4)
P 		809.9
(2.8)
P 		833.4
(3)
P 		70.4
(-3)
A 		763
B 155.7
(-2.2)
P 		860.1
(2.7)
P 		897.9
(3)
P 		45.9
(-3)
A 		852
C 204.5
(-2)
P 		767.7
(2.5)
P 		824
(3)
P 		82
(-3)
A 		742
avr 170.9
(-2.2) 		812.6
(2.7) 		851.8
(3) 		66.1
(-3) 		786

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 995
1 2 3 4 5 6 range
A 223.9
(-3)
P 		758.9
(0.3)
P 		780
(0.4)
P 		1198.2
(3)
P 		752.4
(0.3)
P 		336.4
(-2.3)
P 		974
B 202.9
(-3)
P 		801.3
(1.4)
P 		554.7
(-0.4)
P 		1014.3
(3)
P 		836.5
(1.7)
P 		273.4
(-2.5)
P 		811
C 265.8
(-2.9)
P 		808.2
(0.7)
P 		626
(-0.5)
P 		1156.8
(3)
P 		736.7
(0.2)
P 		254.6
(-3)
P 		902
avr 230.9
(-3) 		789.5
(0.8) 		653.6
(-0.2) 		1123.1
(3) 		775.2
(0.7) 		288.1
(-2.6) 		892
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 277
1 2 3 4 range
A 55.5
(-1.7)
P 		175.8
(1.8)
P 		217.9
(3)
P 		10.3
(-3)
A 		208
B 49.7
(-1.8)
P 		212.4
(3)
P 		208.1
(2.9)
P 		9.8
(-3)
A 		203
C 67.7
(-1.8)
P 		220.7
(1.5)
P 		287.2
(3)
P 		13.8
(-3)
A 		273
avr 57.6
(-1.8) 		203
(2.1) 		237.7
(3) 		11.3
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 299
1 2 3 4 5 6 range
A 41.3
(-3)
P 		269.9
(2.2)
P 		169.9
(-0.1)
P 		303.9
(3)
P 		227
(1.2)
P 		81.9
(-2.1)
P 		263
B 70.6
(-3)
P 		266.7
(1.4)
P 		134.7
(-1.6)
P 		268.6
(1.4)
P 		339.9
(3)
P 		101.9
(-2.3)
P 		269
C 98.5
(-2.5)
P 		246.6
(3)
P 		159.3
(-0.2)
P 		232.6
(2.5)
P 		238.4
(2.7)
P 		85.2
(-3)
P 		161
avr 70.1
(-3) 		261.1
(2.8) 		154.6
(-0.4) 		268.4
(3) 		268.4
(3) 		89.7
(-2.4) 		198
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184091_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12242
Sequence Type Exemplar sequence
Representative Public ID C26F1.5 NCBI
Target Description C26F1.5 /REP_DB=WormBase Gene ID /WP=CE06879 /TR=Q18230 /GB=AAB37077.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072604(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072604 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-10) (grl-10) mRNA, complete cds. 11/11 None
SNAP00000018568 ENSEMBL cdna:SNAP chromosome:CEL140:V:7777187:7778278:1 11/11 None
GENEFINDER00000018579 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7777187:7778278:1 11/11 None
C26F1.5 ENSEMBL cdna:known chromosome:CEL140:V:7777113:7778287:1 gene:C26F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7777187-7778279(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-10
Ensembl C26F1.5
Entrez Gene 179152 Entrez gene
SwissProt Q18230 EMBL-EBI
WormBase CE06879 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37077 Ground-like (grd related) protein 10 [Caenorhabditis elegans] ref|NP_505005.1| GRound-Like (grd related) family member (grl-10) [Caenorhabditis elegans] 1.0E-121
blast CAE73186 Hypothetical protein CBG20585 [Caenorhabditis briggsae] 5.0E-95
blast CAB07652 Hypothetical protein T02E9.2a [Caenorhabditis elegans] ref|NP_001024093.1| GRound-Like (grd related) family member (grl-7) [Caenorhabditis elegans] 3.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 7.2E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505005.1 1 7-29
C26F1.5 1 7-29
SNAP00000018568 1 7-29
GENEFINDER00000018579 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:184091_AT
accaccacgggtatattctgttccagatgaacttgacttgagagctgctgcatttggagt
gccgattcagccacaaccacagtacacgattttcgacattctgcataacttgggagaaag
taacgacaatccagcacagcagttggtcgtcgcagacggaagtacgaacaccaactactt
cccgaaagagaatgacgaggatctcactgtatccgacatgacaggcgatggaggcttgta
tcggtcgaaaaatattcgaagagcacctgtagagccaacggtccatgttcatcgagacag
ttcggttgaaaccactactatttcgtctgaaatatctggaatggaaacggatgaaactct
agacaaaaataaatgcagcagctcagttttacgaaaactcatgatcgagaacatcagcga
cagctcttcggaatctaaaagaaatatcaacctagcagctgagggtaaattcggaggcaa
tgttgacgttatttgctctcgggggcacttttcctatatcttcacctcaaatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCACCACGGGTATATTCTGTTCCA 67 87 252 Antisense
GAACTTGACTTGAGAGCTGCTGCAT 345 349 280 Antisense
TTTGGAGTGCCGATTCAGCCACAAC 365 665 304 Antisense
GCCACAACCACAGTACACGATTTTC 127 279 321 Antisense
TCCAGCACAGCAGTTGGTCGTCGCA 146 589 381 Antisense
GACGAGGATCTCACTGTATCCGACA 482 379 445 Antisense
AGAGCACCTGTAGAGCCAACGGTCC 486 67 511 Antisense
GCCAACGGTCCATGTTCATCGAGAC 296 277 525 Antisense
ACATCAGCGACAGCTCTTCGGAATC 398 105 662 Antisense
ATGTTGACGTTATTTGCTCTCGGGG 153 45 731 Antisense
TTCCTATATCTTCACCTCAAATCTA 231 701 762 Antisense
Sequence Source Affymetrix Proprietary Database