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[184090_at]

Description T21B10.1 /REP_DB=WormBase Gene ID /WP=CE03683 /TR=Q22623 /GB=CAA92691.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 30      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 76      6grp_total > 42      4grp_total > 25      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 517
1 2 3 4 range
A 986.1
(-3)
P 		1297.1
(0.6)
P 		1070.6
(-2)
P 		1503.5
(3)
P 		517
B 1073.5
(-3)
P 		1220.1
(-0.8)
P 		1230.7
(-0.6)
P 		1466.1
(3)
P 		393
C 1095.6
(-3)
P 		1202.5
(-1)
P 		1260.9
(0.2)
P 		1409.4
(3)
P 		314
avr 1051.7
(-3) 		1239.9
(-0.2) 		1187.4
(-1) 		1459.7
(3) 		408

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 581
1 2 3 4 5 6 range
A 1120.1
(0.8)
P 		1080.5
(0.3)
P 		1289.1
(3)
P 		1023.1
(-0.4)
P 		821.3
(-3)
P 		961.4
(-1.2)
P 		468
B 1072.3
(-0.4)
P 		1137.4
(0.3)
P 		1384.5
(3)
P 		1033.5
(-0.8)
P 		831.4
(-3)
P 		906
(-2.2)
P 		553
C 1017.4
(0.3)
P 		1107.6
(1.7)
P 		1188.8
(3)
P 		1107
(1.7)
P 		803.6
(-3)
P 		1007.6
(0.2)
P 		385
avr 1069.9
(0.2) 		1108.5
(0.7) 		1287.5
(3) 		1054.5
(0) 		818.8
(-3) 		958.3
(-1.2) 		469
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 359
(3)
P 		281.6
(-0.3)
P 		279.9
(-0.4)
P 		220.1
(-3)
P 		139
B 342.3
(3)
P 		301.3
(-1.3)
P 		285.2
(-3)
P 		312.4
(-0.1)
P 		57
C 362.7
(0.7)
P 		345.7
(0.2)
P 		439.5
(3)
P 		237.7
(-3)
P 		202
avr 354.7
(3) 		309.5
(0.2) 		334.9
(1.8) 		256.7
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 206.5
(-3)
P 		384.3
(3)
P 		280.7
(-0.5)
P 		259.5
(-1.2)
P 		247.8
(-1.6)
P 		234.1
(-2.1)
P 		178
B 373.1
(2.7)
P 		378.6
(3)
P 		336.2
(0.6)
P 		273.7
(-3)
P 		337.8
(0.7)
P 		337.9
(0.7)
P 		105
C 377.1
(3)
P 		338
(1.5)
P 		302.6
(0.1)
P 		222.6
(-3)
P 		260
(-1.5)
P 		337.3
(1.5)
P 		155
avr 318.9
(0.5) 		367
(3) 		306.5
(-0.2) 		251.9
(-3) 		281.9
(-1.4) 		303.1
(-0.3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4032
Sequence Type Exemplar sequence
Representative Public ID T21B10.1 NCBI
Target Description T21B10.1 /REP_DB=WormBase Gene ID /WP=CE03683 /TR=Q22623 /GB=CAA92691.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063498(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063498 NCBI Caenorhabditis elegans T21B10.1 (T21B10.1) mRNA, complete cds. 11/11 None
SNAP00000044362 ENSEMBL cdna:SNAP chromosome:CEL140:II:8929763:8930719:1 11/11 None
GENEFINDER00000044372 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8929763:8930719:1 11/11 None
T21B10.1 ENSEMBL cdna:known chromosome:CEL140:II:8929751:8930847:1 gene:T21B10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8929759-8930716(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T21B10.1
Entrez Gene 174422 Entrez gene
SwissProt Q22623 EMBL-EBI
WormBase CE03683 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92691 Hypothetical protein T21B10.1 [Caenorhabditis elegans] ref|NP_495899.1| T21B10.1 [Caenorhabditis elegans] 1.0E-164
blast CAE59761 Hypothetical protein CBG03213 [Caenorhabditis briggsae] 1.0E-131
blast EAA11140 ENSANGP00000021853 [Anopheles gambiae str. PEST] ref|XP_315489.2| ENSANGP00000021853 [Anopheles gambiae str. PEST] 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:184090_AT
atgccatccgggccagaggttttctcaaatacacgcaaaactatgttcccggcgttgatg
tcaaaaaccaagtacttgaagcagcgtcatcatgtctaagaagtgctggagtaaagtctg
aaaacgtggatcagtacaaatttgtggaaggagataactctgtaaagttcgagttgttga
acaggctgggaaaatccatcgaacattggccaaccaatggaaaacttcttcatttggaaa
cagtggcagacgtcgtcgaattttatcagacgcctgtcaaaaatgtaacaaaatatacag
aaatggctcgcgatgagaacaaaccgaaaaacgtctcgattatggagcatgctgcacgtt
tccatcctgaagacactcacatgtatcatggtggaatcactgcattcccaggatcaggtg
gtgaagttctctctctgagacagaaacgtctacttcgacagttccaaccgaaaaaagaat
ggttcgattatgatgatcagacatttgattacactcgtcctgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCATCCGGGCCAGAGGTTTTCT 218 39 245 Antisense
CTATGTTCCCGGCGTTGATGTCAAA 166 223 285 Antisense
GTACTTGAAGCAGCGTCATCATGTC 692 459 316 Antisense
AATCCATCGAACATTGGCCAACCAA 566 167 437 Antisense
GGAAACAGTGGCAGACGTCGTCGAA 402 527 480 Antisense
TTATGGAGCATGCTGCACGTTTCCA 166 679 584 Antisense
GTTTCCATCCTGAAGACACTCACAT 461 451 602 Antisense
AATCACTGCATTCCCAGGATCAGGT 286 171 639 Antisense
CAGGTGGTGAAGTTCTCTCTCTGAG 300 209 659 Antisense
GAAACGTCTACTTCGACAGTTCCAA 511 357 687 Antisense
GACATTTGATTACACTCGTCCTGAC 61 371 744 Antisense
Sequence Source Affymetrix Proprietary Database