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[184089_s_at]

Description F09G2.9 /REP_DB=WormBase Gene ID /WP=CE09304 /TR=O17406 /GB=AAB71317.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 30      6grp_total > 16      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 554
1 2 3 4 range
A 993.8
(3)
P 		973.4
(2.7)
P 		870.9
(1.4)
P 		538.4
(-3)
P 		455
B 1091.9
(3)
P 		947
(1.2)
P 		915
(0.8)
P 		608.3
(-3)
P 		484
C 1046.1
(2.6)
P 		1024.6
(2.3)
P 		1072.9
(3)
P 		657.4
(-3)
P 		416
avr 1043.9
(3) 		981.7
(2.2) 		952.9
(1.8) 		601.4
(-3) 		443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1260
1 2 3 4 5 6 range
A 842.5
(0.9)
P 		1054.3
(3)
P 		453.9
(-3)
P 		712.5
(-0.4)
P 		461
(-2.9)
P 		912.5
(1.6)
P 		600
B 987.9
(3)
P 		978
(2.9)
P 		548
(-2)
P 		629.8
(-1)
P 		455
(-3)
P 		530.2
(-2.2)
P 		533
C 1713.9
(3)
P 		959.4
(-1.5)
P 		950.6
(-1.5)
P 		754.4
(-2.7)
P 		1015
(-1.1)
P 		699.5
(-3)
P 		1014
avr 1181.4
(3) 		997.2
(0.9) 		650.8
(-2.9) 		698.9
(-2.4) 		643.7
(-3) 		714.1
(-2.2) 		538
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 361.8
(3)
P 		211.3
(-0.2)
P 		227.7
(0.2)
P 		78.8
(-3)
P 		283
B 348.2
(3)
P 		233.9
(-0.1)
P 		212
(-0.7)
P 		129.6
(-3)
P 		219
C 346.3
(2.4)
P 		294.6
(1.2)
P 		373.9
(3)
P 		110.8
(-3)
P 		263
avr 352.1
(3) 		246.6
(0.4) 		271.2
(1) 		106.4
(-3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 155.3
(-1.8)
P 		374.9
(3)
P 		98.9
(-3)
P 		180.7
(-1.2)
P 		139.1
(-2.1)
P 		222.2
(-0.3)
P 		276
B 343.7
(3)
P 		325.5
(2.5)
P 		133.1
(-3)
P 		166.8
(-2)
P 		184.9
(-1.5)
P 		197.7
(-1.2)
P 		211
C 635.3
(3)
P 		292.8
(-1.2)
P 		242
(-1.9)
P 		151.7
(-3)
P 		328.4
(-0.8)
P 		234.2
(-2)
P 		484
avr 378.1
(3) 		331.1
(1.7) 		158
(-3) 		166.4
(-2.8) 		217.5
(-1.4) 		218
(-1.4) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184089_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12364
Sequence Type Exemplar sequence
Representative Public ID F09G2.9 NCBI
Target Description F09G2.9 /REP_DB=WormBase Gene ID /WP=CE09304 /TR=O17406 /GB=AAB71317.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072424(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072424 NCBI Caenorhabditis elegans F09G2.9 (F09G2.9) mRNA, complete cds. 11/11 None
SNAP00000025947 ENSEMBL cdna:SNAP chromosome:CEL140:V:7196953:7198727:-1 11/11 None
GENEFINDER00000025950 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7196953:7198727:-1 11/11 None
F09G2.9.2 ENSEMBL cdna:known chromosome:CEL140:V:7195898:7198730:-1 gene:F09G2.9 11/11 A 
F09G2.9.1 ENSEMBL cdna:known chromosome:CEL140:V:7195898:7198729:-1 gene:F09G2.9 11/11 A 
F09G2.9.3 ENSEMBL cdna:known chromosome:CEL140:V:7196360:7198735:-1 gene:F09G2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7196953-7198728(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09G2.9
Entrez Gene 179106 Entrez gene
SwissProt O17406 EMBL-EBI
WormBase CE09304 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504825 F09G2.9 [Caenorhabditis elegans] gb|AAB71317.1| Hypothetical protein F09G2.9 [Caenorhabditis elegans] 5.0E-59
blast CAE72018 Hypothetical protein CBG19100 [Caenorhabditis briggsae] 6.0E-48
Sequence
Target Sequence 
>C. ELEGANS:184089_S_AT
gttgccgagactactgtagctccagttgctacaccttctgggcgtggacgtggaagagga
cgcggaagaccaccaggaccaaatgcgactccaaaggctgcggcttctgagaaaaagagg
gctgcaaagccgaaggcggcggttaacccagagtcaatcgcagccagcagaccacgtcgt
tcaacatcgaaccgaatcgattacgcaaactctgacacaagcactgttctcgccgaagtc
gacgatgaaattcctggaaaacttttcagaggacgcaagcccccacggggcaagatcaca
aagtacgtctcggattctgacggcgcaccatcggatgaagatgacgttgacttcggaaag
aagaagaaaggtgctccttctactcgcggaagaggacgtccaccaagcagcaacagacca
actcgtgctgccgccacaaagagatctgcaaaggatgcttccgatgagtcgaatgaggat
gaaatcgaatacgatgacaaaagcgacgaagatgtttctccaagaaagaaggccagagga
gcacctgctagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCCGAGACTACTGTAGCTCCAG 438 439 643 Antisense
CAAATGCGACTCCAAAGGCTGCGGC 624 189 722 Antisense
CGGTTAACCCAGAGTCAATCGCAGC 352 243 782 Antisense
AGACCACGTCGTTCAACATCGAACC 162 69 811 Antisense
AACTCTGACACAAGCACTGTTCTCG 434 141 850 Antisense
CTGTTCTCGCCGAAGTCGACGATGA 600 239 866 Antisense
GTACGTCTCGGATTCTGACGGCGCA 681 457 945 Antisense
GAAGAAAGGTGCTCCTTCTACTCGC 89 339 1005 Antisense
TACTCGCGGAAGAGGACGTCCACCA 111 637 1023 Antisense
TGCTGCCGCCACAAAGAGATCTGCA 190 583 1068 Antisense
AGGCCAGAGGAGCACCTGCTAGAGC 16 53 1172 Antisense
Sequence Source Affymetrix Proprietary Database