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[184088_at]

Description F44E7.7 /REP_DB=WormBase Gene ID /WP=CE10408 /TR=O16252 /GB=AAC25792.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 40      6grp_total > 33      4grp_total > 34      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 92.5
(-3)
P 		99.6
(-1.1)
M 		114.8
(3)
M 		110.8
(1.9)
P 		22
B 60.9
(-3)
P 		147.8
(3)
A 		116
(0.8)
A 		115.8
(0.8)
P 		87
C 156.4
(2.6)
A 		159.6
(3)
A 		106.8
(-3)
P 		155.1
(2.5)
P 		53
avr 103.3
(-3) 		135.7
(3) 		112.5
(-1.3) 		127.2
(1.4) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 98.6
(0.6)
A 		70
(-3)
A 		112.8
(2.4)
A 		96.8
(0.4)
P 		117.4
(3)
A 		73.2
(-2.6)
A 		47
B 112.2
(2.1)
P 		80.5
(-3)
P 		118.1
(3)
P 		97.6
(-0.3)
A 		94.6
(-0.8)
P 		110.1
(1.7)
P 		38
C 73.6
(-1.4)
A 		138
(3)
A 		64.2
(-2)
A 		60.5
(-2.3)
A 		71.3
(-1.6)
A 		50.1
(-3)
P 		88
avr 94.8
(2) 		96.2
(2.4) 		98.4
(3) 		85
(-0.9) 		94.4
(1.8) 		77.8
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 33.7
(3)
P 		21.6
(-1.1)
M 		30
(1.7)
M 		16.2
(-3)
P 		18
B 19.4
(-3)
P 		36.5
(3)
A 		26.9
(-0.4)
A 		24.7
(-1.1)
P 		17
C 51.8
(3)
A 		45.9
(1.6)
A 		37.2
(-0.4)
P 		26.2
(-3)
P 		26
avr 35
(3) 		34.7
(2.9) 		31.4
(1.3) 		22.4
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 18.2
(-2.9)
A 		24.9
(-0.6)
A 		24.6
(-0.7)
A 		24.5
(-0.7)
P 		35.4
(3)
A 		17.8
(-3)
A 		18
B 39
(2.2)
P 		26.8
(-2.6)
P 		28.7
(-1.9)
P 		25.9
(-3)
A 		38.4
(2)
P 		41
(3)
P 		15
C 27.3
(0)
A 		42.1
(3)
A 		16.3
(-2.2)
A 		12.2
(-3)
A 		23.1
(-0.8)
A 		16.8
(-2.1)
P 		30
avr 28.2
(0.8) 		31.3
(2.5) 		23.2
(-1.8) 		20.9
(-3) 		32.3
(3) 		25.2
(-0.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12031
Sequence Type Exemplar sequence
Representative Public ID F44E7.7 NCBI
Target Description F44E7.7 /REP_DB=WormBase Gene ID /WP=CE10408 /TR=O16252 /GB=AAC25792.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072116(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072116 NCBI Caenorhabditis elegans F44E7.7 (F44E7.7) mRNA, complete cds. 11/11 None
GENEFINDER00000006998 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5783911:5788054:-1 9/11 None
F44E7.7 ENSEMBL cdna:known chromosome:CEL140:V:5785487:5788242:-1 gene:F44E7.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006991 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5785486-5788242(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44E7.7
Entrez Gene 185739 Entrez gene
SwissProt O16252 EMBL-EBI
WormBase CE10408 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC25792 Hypothetical protein F44E7.7 [Caenorhabditis elegans] ref|NP_504517.1| F44E7.7 [Caenorhabditis elegans] 0.0
blast CAE64570 Hypothetical protein CBG09321 [Caenorhabditis briggsae] 0.0
blast AAC25791 Hypothetical protein F44E7.6 [Caenorhabditis elegans] ref|NP_504516.1| F44E7.6 [Caenorhabditis elegans] 0.0
blast CAE58039 Hypothetical protein CBG01115 [Caenorhabditis briggsae] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 7.8E-28
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.1E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504517.1 12 37-59,98-118,125-147,157-179,186-208,218-237,278-300,315-337,349-371,376-395,408-430,440-462
F44E7.7 12 37-59,98-118,125-147,157-179,186-208,218-237,278-300,315-337,349-371,376-395,408-430,440-462
GENEFINDER00000006998 11 20-42,80-100,107-129,139-161,168-190,200-219,260-282,297-319,331-353,358-377,390-412
Sequence
Target Sequence 
>C. ELEGANS:184088_AT
gtgttccgtaccgagcaatatgctttgataaatgtgtacttgcaacgtggctttcaatgt
gcggaagaaatgttgcattctacgtacttgttttgtatggacctacttatctgagagaag
ttttacattttgatgtaaaaggcaccggatgggcagcagctttaccgtttgtttcgtgtg
caattgttaaatttgcatcaggtcaactaacggatagactgacaatgttttccgagaaga
caaagtttgttacctgcacactaatctccatgattggattggccgctggatttgtcgtca
tgtcattgacatcttccagaacaattgcccaaatttcatatacttttgcagttactctgt
caggcattacaatcatgggtacagttaaatgtttgcaactgcgatgccaacaacatgttc
actttgcaactgttgttgttgcattcatggcatgcatttggcagtttttggtacctcttg
gagtagggtacctttgtccgaataatactcctgaagaatggtctttcttgttttttattg
tatccggaattgttttaattgtcaatattcctttcccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTCCGTACCGAGCAATATGCTT 52 485 812 Antisense
ATGTGTACTTGCAACGTGGCTTTCA 614 49 843 Antisense
GTTGCATTCTACGTACTTGTTTTGT 111 439 883 Antisense
AAAAGGCACCGGATGGGCAGCAGCT 150 133 948 Antisense
GCAGCTTTACCGTTTGTTTCGTGTG 204 313 967 Antisense
AGTTTGTTACCTGCACACTAATCTC 206 63 1055 Antisense
GACATCTTCCAGAACAATTGCCCAA 33 371 1119 Antisense
GCAACTGCGATGCCAACAACATGTT 506 319 1206 Antisense
GGCAGTTTTTGGTACCTCTTGGAGT 273 537 1271 Antisense
TACCTTTGTCCGAATAATACTCCTG 664 649 1300 Antisense
TAATTGTCAATATTCCTTTCCCGTT 22 635 1367 Antisense
Sequence Source Affymetrix Proprietary Database