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[184087_at]

Description F59B1.6 /REP_DB=WormBase Gene ID /WP=CE17947 /TR=O61879 /GB=AAC17661.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 3.6
(-3)
A 		8
(-1.1)
A 		10
(-0.2)
A 		17.4
(3)
A 		14
B 34.1
(3)
A 		5.7
(-2.8)
A 		11.2
(-1.6)
A 		4.5
(-3)
A 		30
C 3.6
(-3)
A 		5.9
(-2.8)
A 		7
(-2.7)
A 		67.7
(3)
A 		64
avr 13.8
(-1.1) 		6.5
(-3) 		9.4
(-2.3) 		29.9
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 9.9
(1.4)
A 		3
(-2.7)
A 		4.7
(-1.7)
A 		2.5
(-3)
A 		12.6
(3)
A 		5.2
(-1.4)
A 		10
B 4.8
(-1.8)
A 		6.8
(-0.7)
A 		13.5
(3)
A 		5.7
(-1.3)
A 		2.6
(-3)
A 		6.1
(-1.1)
A 		11
C 4.2
(-2.7)
A 		13.2
(3)
A 		6.2
(-1.4)
A 		9.5
(0.7)
A 		3.9
(-2.9)
A 		3.7
(-3)
A 		10
avr 6.3
(-0.5) 		7.7
(2.2) 		8.1
(3) 		5.9
(-1.3) 		6.4
(-0.3) 		5
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.3
(-3)
A 		1.7
(-1.2)
A 		2.6
(3)
A 		2.5
(2.5)
A 		1
B 10.9
(3)
A 		1.4
(-2.8)
A 		2.6
(-2)
A 		1
(-3)
A 		10
C 1.2
(-3)
A 		1.7
(-2.7)
A 		2.5
(-2.2)
A 		11.4
(3)
A 		10
avr 4.5
(2.1) 		1.6
(-3) 		2.6
(-1.2) 		5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.8
(-0.8)
A 		1.1
(-2.1)
A 		1
(-2.3)
A 		0.6
(-3)
A 		3.8
(3)
A 		1.3
(-1.7)
A 		3
B 1.7
(-1.4)
A 		2.3
(0.3)
A 		3.3
(3)
A 		1.5
(-1.9)
A 		1.1
(-3)
A 		2.3
(0.3)
A 		2
C 1.6
(-2.1)
A 		4
(3)
A 		1.6
(-2.1)
A 		1.9
(-1.5)
A 		1.2
(-3)
A 		1.2
(-3)
A 		3
avr 1.7
(-1) 		2.5
(3) 		2
(0.5) 		1.3
(-3) 		2
(0.5) 		1.6
(-1.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15025
Sequence Type Exemplar sequence
Representative Public ID F59B1.6 NCBI
Target Description F59B1.6 /REP_DB=WormBase Gene ID /WP=CE17947 /TR=O61879 /GB=AAC17661.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071618 NCBI Caenorhabditis elegans F59B1.6 (F59B1.6) mRNA, complete cds. 11/11 None
F59B1.6 ENSEMBL cdna:known chromosome:CEL140:V:3629268:3631506:-1 gene:F59B1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030015 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030029 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3629267-3631506(-) 98.43 100.0
Public Domain and Genome References
Gene Title
Ensembl F59B1.6
Entrez Gene 186591 Entrez gene
SwissProt O61879 EMBL-EBI
WormBase CE17947 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17661 Hypothetical protein F59B1.6 [Caenorhabditis elegans] ref|NP_504019.1| F59B1.6 [Caenorhabditis elegans] 0.0
blast CAE62542 Hypothetical protein CBG06651 [Caenorhabditis briggsae] 1.0E-66
blast CAE62543 Hypothetical protein CBG06652 [Caenorhabditis briggsae] 9.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504019.1 5 23-45,65-87,102-124,137-159,205-222
F59B1.6 5 23-45,65-87,102-124,137-159,205-222
Sequence
Target Sequence 
>C. ELEGANS:184087_AT
tatatagcgattcccatgccgttttgctggatatcagccggctcttcaatatctgaaaca
caggattttgtgagaaaattctatccgaatgccacaaaggttttggatattcctggaatt
tttgtttataccgattcctggaagtttcatcgaattttggttgtagcgatggttttgctg
gtttctggaggcgttgtgagttttttgaaattaagcagtcagcaggcagctttacatctt
tctatgtcaaatcataatctacgaaatccggctgcaatgcaaactttggagcgagaaaat
agtaaaatatcacagaaaagcgctgaaagatacgattattcagaacttactgtttggcac
gtttcttgcagcaatcccactttttcaaattctcaatgcatacagggaccccgaggtgga
cacaattaccacgacaatcataaccaacgcaatttttgtatcgtctccaattccctacgc
cataacaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATAGCGATTCCCATGCCGTTTT 616 661 472 Antisense
TTGCTGGATATCAGCCGGCTCTTCA 405 701 495 Antisense
TGGTTTTGCTGGTTTCTGGAGGCGT 573 549 641 Antisense
AGCAGGCAGCTTTACATCTTTCTAT 104 79 692 Antisense
TCTACGAAATCCGGCTGCAATGCAA 90 611 729 Antisense
ACTGTTTGGCACGTTTCTTGCAGCA 660 97 820 Antisense
TTGCAGCAATCCCACTTTTTCAAAT 81 705 837 Antisense
AATTCTCAATGCATACAGGGACCCC 596 173 859 Antisense
GACCCCGAGGTGGACACAATTACCA 279 381 878 Antisense
GCAATTTTTGTATCGTCTCCAATTC 378 321 920 Antisense
CCAATTCCCTACGCCATAACAATAT 669 275 938 Antisense
Sequence Source Affymetrix Proprietary Database