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[184086_at]

Description W03B1.7 /REP_DB=WormBase Gene ID /WP=CE14500 /TR=O45882 /GB=AAC24435.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 29      4grp_high_8_8 > 37      6grp_total > 45      4grp_total > 43      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 14.3
(-3)
A 		104.3
(3)
P 		26.3
(-2.2)
M 		29.7
(-2)
A 		90
B 43.2
(-1.2)
P 		100.4
(3)
P 		48.7
(-0.8)
P 		19.5
(-3)
A 		81
C 42
(-3)
A 		112.4
(3)
P 		55.8
(-1.8)
P 		79.3
(0.2)
P 		70
avr 33.2
(-3) 		105.7
(3) 		43.6
(-2.1) 		42.8
(-2.2) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 96.7
(3)
P 		54.5
(0.1)
P 		55.1
(0.2)
P 		8.8
(-3)
A 		67
(1)
P 		82.8
(2.1)
P 		88
B 51.2
(0.7)
P 		76.1
(3)
P 		49.5
(0.5)
P 		48.5
(0.4)
P 		11.8
(-3)
A 		61.1
(1.6)
P 		64
C 39.2
(-0.5)
M 		64.9
(3)
P 		52.1
(1.2)
A 		21.3
(-3)
A 		21.5
(-3)
M 		35.7
(-1)
P 		44
avr 62.4
(2.6) 		65.2
(3) 		52.2
(1) 		26.2
(-3) 		33.4
(-1.9) 		59.9
(2.2) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 5.2
(-2.7)
A 		22.6
(3)
P 		6.9
(-2.1)
M 		4.3
(-3)
A 		18
B 13.8
(-0.2)
P 		24.8
(3)
P 		11.3
(-0.9)
P 		4.2
(-3)
A 		21
C 13.9
(-2.8)
A 		32.3
(3)
P 		19.4
(-1.1)
P 		13.4
(-3)
P 		19
avr 11
(-1.8) 		26.6
(3) 		12.5
(-1.4) 		7.3
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 17.8
(2.2)
P 		19.4
(2.7)
P 		12
(0.3)
P 		2.2
(-3)
A 		20.2
(3)
P 		20.2
(3)
P 		18
B 17.8
(0.8)
P 		25.3
(3)
P 		12
(-0.9)
P 		12.8
(-0.7)
P 		4.8
(-3)
A 		22.8
(2.3)
P 		21
C 14.5
(0.9)
M 		19.8
(3)
P 		13.3
(0.5)
A 		4.3
(-3)
A 		6.9
(-2)
M 		12
(-0)
P 		16
avr 16.7
(1.1) 		21.5
(3) 		12.4
(-0.6) 		6.4
(-3) 		10.6
(-1.3) 		18.3
(1.7) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10649
Sequence Type Exemplar sequence
Representative Public ID W03B1.7 NCBI
Target Description W03B1.7 /REP_DB=WormBase Gene ID /WP=CE14500 /TR=O45882 /GB=AAC24435.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068143(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068143 NCBI Caenorhabditis elegans W03B1.7 (W03B1.7) mRNA, complete cds. 11/11 None
W03B1.7 ENSEMBL cdna:known chromosome:CEL140:IV:4336827:4339043:1 gene:W03B1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035758 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035768 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4336832-4339049(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03B1.7
Entrez Gene 189146 Entrez gene
SwissProt O45882 EMBL-EBI
WormBase CE14500 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24435 Hypothetical protein W03B1.7 [Caenorhabditis elegans] ref|NP_500544.1| W03B1.7 [Caenorhabditis elegans] 1.0E-164
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 2.0E-83
blast CAE65677 Hypothetical protein CBG10743 [Caenorhabditis briggsae] 3.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 7.3E-95
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500544.1 6 48-67,100-122,135-157,172-191,212-234,265-287
W03B1.7 6 48-67,100-122,135-157,172-191,212-234,265-287
Sequence
Target Sequence 
>C. ELEGANS:184086_AT
gacatcttcactcatacgtggtctttatctgttgaaattcagttttatttcctagttcca
ttaattttccttatttcaaaatggattccaaagaagaatcaatatgaatattatgcaatt
ataggtttattaacttttaggtgttttttaatacagttttcaggttgtctatcgtatatt
ttttcattttgctcaccagattccacagccttcaatagcgtttttgcaagaatttggcag
tttttaattggcatggtagtttacaccgctctgtggaacattgaagatcaaaataagcaa
tttaaaaaccgtgtggtaaggaaaatcgatgacaacaaccgactgaattcatcatatgta
tcctatttttctttggctgcattgctatttatcactgctttcccgtacactctgaaagca
tcaattgttagaccattggtaactgttggaacaggatgtttaatgcttatatcggaagat
aatgtcatgttgtcgaataaagttttgacatacattggagatatttcatattcactatat
ctgatacactggccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATCTTCACTCATACGTGGTCTT 180 371 304 Antisense
CATACGTGGTCTTTATCTGTTGAAA 174 215 316 Antisense
TCAGTTTTATTTCCTAGTTCCATTA 677 611 342 Antisense
CAGTTTTCAGGTTGTCTATCGTATA 465 205 457 Antisense
ATTCCACAGCCTTCAATAGCGTTTT 457 7 503 Antisense
GTAGTTTACACCGCTCTGTGGAACA 218 455 559 Antisense
GACAACAACCGACTGAATTCATCAT 585 365 634 Antisense
TCCTATTTTTCTTTGGCTGCATTGC 85 593 664 Antisense
ATTGCTATTTATCACTGCTTTCCCG 642 5 684 Antisense
TTCCCGTACACTCTGAAAGCATCAA 118 697 703 Antisense
TCACTATATCTGATACACTGGCCTA 184 627 835 Antisense
Sequence Source Affymetrix Proprietary Database