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[184084_at]

Description C17A2.2 /REP_DB=WormBase Gene ID /WP=CE08240 /TR=O16536 /GB=AAB66026.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 45.1
(2.3)
A 		35.4
(0.2)
A 		19.9
(-3)
A 		48.6
(3)
A 		29
B 6.6
(-3)
A 		27.5
(2.4)
A 		17.3
(-0.3)
A 		30
(3)
A 		23
C 60.3
(3)
A 		20.2
(-2.3)
A 		15
(-3)
A 		36.1
(-0.2)
A 		45
avr 37.3
(2.7) 		27.7
(-0) 		17.4
(-3) 		38.2
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 7.2
(-2.6)
A 		9.4
(-2.2)
A 		14
(-1.2)
A 		6.9
(-2.7)
A 		34.3
(3)
A 		5.4
(-3)
A 		29
B 26.8
(1.6)
A 		24.2
(1)
A 		32.3
(3)
A 		8.4
(-3)
A 		23.7
(0.8)
A 		9.2
(-2.8)
A 		24
C 21.5
(1)
A 		23.7
(1.5)
A 		3.6
(-2.8)
A 		11.7
(-1.1)
A 		31
(3)
A 		2.6
(-3)
A 		28
avr 18.5
(0.2) 		19.1
(0.4) 		16.6
(-0.3) 		9
(-2.2) 		29.7
(3) 		5.7
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16.4
(3)
A 		7.7
(-1.7)
A 		5.2
(-3)
A 		7.1
(-2)
A 		11
B 2.1
(-3)
A 		6.8
(3)
A 		4
(-0.6)
A 		6.4
(2.5)
A 		5
C 20
(3)
A 		5.8
(-2.8)
A 		5.2
(-3)
A 		6.1
(-2.6)
A 		15
avr 12.8
(3) 		6.8
(-1.5) 		4.8
(-3) 		6.5
(-1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.3
(-3)
A 		3.4
(-1.6)
A 		3
(-1.9)
A 		1.7
(-2.7)
A 		10.4
(3)
A 		1.3
(-3)
A 		9
B 9.3
(2.8)
A 		8.1
(1.8)
A 		7.9
(1.6)
A 		2.2
(-3)
A 		9.6
(3)
A 		3.4
(-2)
A 		7
C 8
(1.7)
A 		7.2
(1.2)
A 		0.9
(-3)
A 		2.4
(-2)
A 		10
(3)
A 		0.9
(-3)
A 		9
avr 6.2
(0.2) 		6.2
(0.2) 		3.9
(-1.5) 		2.1
(-2.9) 		10
(3) 		1.9
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5493
Sequence Type Exemplar sequence
Representative Public ID C17A2.2 NCBI
Target Description C17A2.2 /REP_DB=WormBase Gene ID /WP=CE08240 /TR=O16536 /GB=AAB66026.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062269 NCBI Caenorhabditis elegans C17A2.2 (C17A2.2) mRNA, complete cds. 11/11 None
SNAP00000028369 ENSEMBL cdna:SNAP chromosome:CEL140:II:3846480:3848038:1 11/11 None
GENEFINDER00000028378 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3843602:3849035:1 11/11 None
C17A2.2 ENSEMBL cdna:known chromosome:CEL140:II:3846321:3848038:1 gene:C17A2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3846319-3848037(+) 98.75 100.0
Public Domain and Genome References
Gene Title
Ensembl C17A2.2
Entrez Gene 182698 Entrez gene
SwissProt O16536 EMBL-EBI
WormBase CE08240 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66026 Hypothetical protein C17A2.2 [Caenorhabditis elegans] ref|NP_494670.1| C17A2.2 [Caenorhabditis elegans] 0.0
blast AAB66027 Hypothetical protein C17A2.3 [Caenorhabditis elegans] ref|NP_494669.1| C17A2.3 [Caenorhabditis elegans] 1.0E-162
blast CAE73193 Hypothetical protein CBG20594 [Caenorhabditis briggsae] 1.0E-153
blast CAE73193 Hypothetical protein CBG20594 [Caenorhabditis briggsae] 1.0E-152
blast CAE73194 Hypothetical protein CBG20595 [Caenorhabditis briggsae] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 3.4E-121
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.9E-115
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 3.3E-117
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494670.1 1 12-29
C17A2.2 1 12-29
GENEFINDER00000028378 1 32-49
Sequence
Target Sequence 
>C. ELEGANS:184084_AT
aatcgtcgagaatcactatctcctcgagaaaggtctgagaactgatcgtcatcggcatat
caatgaagttgtggactgcaacatctggtctcgaggtcactcaaaatggacaatcttcgc
tgatttagacgagcgtctagtgatgaccgactacccgggaacaatcttgaactatatccg
agaagtggacgatgagaaaatcggtagcttgaagttcagacagcaatggatattgaagac
agagctgatgccacaggaatatgaaggaaaagatcagctgctgcaatggatggcggctca
ccgctggcacaattcaaccggaatcgcccgtcctggacacacaaccaaatgtattgtgga
ctcaacaaaagtattcataatgtcaattcatctagtaattgaattcttccccgggaatgg
gtactatgagaaagagctcaagcctgaagagggactcgtcagacactatcgtgaccaatc
acttggagaatggggagagaagtggttgaaaaccgtgatggaattcggtcctctgagaaa
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGTCGAGAATCACTATCTCCTC 534 169 666 Antisense
GAGAACTGATCGTCATCGGCATATC 150 393 702 Antisense
TTGTGGACTGCAACATCTGGTCTCG 213 709 734 Antisense
ACATCTGGTCTCGAGGTCACTCAAA 66 107 746 Antisense
AGCGTCTAGTGATGACCGACTACCC 314 81 797 Antisense
GACTACCCGGGAACAATCTTGAACT 569 361 814 Antisense
CAGCTGCTGCAATGGATGGCGGCTC 692 203 940 Antisense
TCACCGCTGGCACAATTCAACCGGA 161 625 963 Antisense
GTAATTGAATTCTTCCCCGGGAATG 626 459 1060 Antisense
AGGGACTCGTCAGACACTATCGTGA 441 57 1115 Antisense
GATGGAATTCGGTCCTCTGAGAAAT 216 407 1182 Antisense
Sequence Source Affymetrix Proprietary Database