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[184083_s_at]

Description F37B12.3 /REP_DB=WormBase Gene ID /WP=CE03291 /TR=Q20118 /GB=CAA90956.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 84      6grp_total > 77      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1200
1 2 3 4 range
A 500
(-2.8)
P 		553.9
(-2.5)
P 		457.2
(-3)
P 		1628.6
(3)
P 		1171
B 571.6
(-2.2)
P 		437
(-3)
P 		502
(-2.6)
P 		1472.7
(3)
P 		1036
C 506.9
(-2.5)
P 		468.6
(-2.7)
P 		428.8
(-3)
P 		1304.9
(3)
P 		876
avr 526.2
(-2.6) 		486.5
(-2.9) 		462.7
(-3) 		1468.7
(3) 		1006

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 555
1 2 3 4 5 6 range
A 544.8
(-1.4)
P 		469.3
(-3)
P 		757.2
(3)
P 		553.1
(-1.3)
P 		542.2
(-1.5)
P 		730
(2.4)
P 		288
B 594.2
(-1.4)
P 		468.2
(-3)
P 		689.1
(-0.1)
P 		489.8
(-2.7)
P 		670.4
(-0.4)
P 		927.5
(3)
P 		459
C 504.6
(-2.5)
P 		494
(-2.6)
P 		456.8
(-3)
P 		635.4
(-1.1)
P 		606.4
(-1.4)
P 		1012.1
(3)
P 		555
avr 547.9
(-2) 		477.2
(-3) 		634.4
(-0.7) 		559.4
(-1.8) 		606.3
(-1.1) 		889.9
(3) 		413
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 182
(0.2)
P 		120.2
(-3)
P 		119.5
(-3)
P 		238.4
(3)
P 		119
B 182.3
(-0.8)
P 		107.9
(-3)
P 		116.3
(-2.8)
P 		313.8
(3)
P 		206
C 167.8
(-0.7)
P 		134.7
(-3)
P 		149.5
(-2)
P 		220
(3)
P 		85
avr 177.4
(-0.5) 		120.9
(-3) 		128.4
(-2.7) 		257.4
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 100.4
(-3)
P 		166.9
(2.2)
P 		164.9
(2)
P 		140.3
(0.1)
P 		163.6
(1.9)
P 		177.7
(3)
P 		77
B 206.7
(-0.9)
P 		155.8
(-2.3)
P 		167.3
(-2)
P 		129.7
(-3)
P 		272.4
(1)
P 		345.9
(3)
P 		216
C 187
(-1.1)
P 		150.7
(-2.1)
P 		116.3
(-3)
P 		127.8
(-2.7)
P 		196.2
(-0.8)
P 		338.8
(3)
P 		223
avr 164.7
(-1.8) 		157.8
(-2) 		149.5
(-2.3) 		132.6
(-3) 		210.7
(0) 		287.5
(3) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184083_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2731
Sequence Type Exemplar sequence
Representative Public ID F37B12.3 NCBI
Target Description F37B12.3 /REP_DB=WormBase Gene ID /WP=CE03291 /TR=Q20118 /GB=CAA90956.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063527 NCBI Caenorhabditis elegans F37B12.3 (F37B12.3) mRNA, complete cds. 11/11 None
SNAP00000007774 ENSEMBL cdna:SNAP chromosome:CEL140:II:9040062:9041316:-1 11/11 None
GENEFINDER00000007776 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9040062:9041316:-1 11/11 None
F37B12.3 ENSEMBL cdna:known chromosome:CEL140:II:9039795:9041972:-1 gene:F37B12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9040058-9041969(-) 93.48 100.0
Public Domain and Genome References
Gene Title
Ensembl F37B12.3
Entrez Gene 174439 Entrez gene
SwissProt Q20118 EMBL-EBI
WormBase CE03291 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90956 Hypothetical protein F37B12.3 [Caenorhabditis elegans] ref|NP_495928.1| F37B12.3 [Caenorhabditis elegans] 0.0
blast CAA90956 Hypothetical protein F37B12.3 [Caenorhabditis elegans] ref|NP_495928.1| F37B12.3 [Caenorhabditis elegans] 1.0E-130
blast CAE59790 Hypothetical protein CBG03250 [Caenorhabditis briggsae] 1.0E-108
blast CAE59790 Hypothetical protein CBG03250 [Caenorhabditis briggsae] 1.0E-107
blast AAH75899 Zgc:92136 [Danio rerio] emb|CAH68905.1| novel protein [Danio rerio] ref|NP_001002356.1| hypothetical protein LOC436629 [Danio rerio] 3.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495928.1 1 140-162
F37B12.3 1 140-162
SNAP00000007774 1 10-32
GENEFINDER00000007776 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:184083_S_AT
gtgatgctcgtatgcaacttcttaggatattcaccgttgtgggcacagatcgccatgaag
aataggaaaacggacaatgtgagaatacggattcccactcatttagctgtctgtttcacg
gaggagcgtctcatcgacttgaccgaagtaatacaactaatggatagttgtgtttctgcg
gaaattcgacaattgtcaatctatgatccattcggagacctggtcaaccaaattagtcag
attgaacaggcttgtcgcattttcacgcgagctgatctctactgcgatggccgacttgta
cattctgacgatcttgctagtattcaggttaacgtattatcaaggaaaatgggcaaagac
gcgcttgtggagacatgtaaaactttatgtcgtgacgacgaaccgattactgtggagaaa
gtatcgaaaattctagaagaaaagtttcatttgagtgacccagactttttactccgaatt
ggaaatgttcctacattatgcggttatcctccttggaatcttcgaataactgaattcctg
cagtcaccacggcttccatgctcacgacgaggactcgactactgtattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATGCTCGTATGCAACTTCTTAG 595 483 445 Antisense
TCACCGTTGTGGGCACAGATCGCCA 302 625 475 Antisense
CCCACTCATTTAGCTGTCTGTTTCA 227 259 538 Antisense
TTCACGGAGGAGCGTCTCATCGACT 665 685 559 Antisense
GATCCATTCGGAGACCTGGTCAACC 263 415 649 Antisense
AACAGGCTTGTCGCATTTTCACGCG 19 137 689 Antisense
CACGCGAGCTGATCTCTACTGCGAT 636 199 708 Antisense
GACTTGTACATTCTGACGATCTTGC 504 371 737 Antisense
GAGTGACCCAGACTTTTTACTCCGA 69 401 897 Antisense
ACATTATGCGGTTATCCTCCTTGGA 642 103 937 Antisense
GACGAGGACTCGACTACTGTATTGA 263 379 1010 Antisense
Sequence Source Affymetrix Proprietary Database